Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02399 ATGCCGACTCTAAGAATTCATGGATATGCCTTTGCTGTTTTGTGTTGTTTTATCATCCTCACAGAAGCTTCACAAACAGACCCTTCAGAAGTAAATGCACTGATAGACATCAAGAAAAGTTTGATTGATCCTAAGAACAATCTGAGGAACTGGAATTCGGGTGACCCGTGTATGGCAAACTGGACTGGGATTTATTGTTCTGATAGGGAGGAGGCTGATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTCTCGGGAAGTTTAGCACCCCAACTTGGTCAGCTATCTCATCTTAAGATACTGTCTTTTATGTGGAACAGTTTGACAAGCACAATACCGAAGGAAATTGGAAATATCTTGTCATTGGAACTCTTGCTCCTAAGTGGGAATAAGTTATCTGGTAGTTTACCAGATGAACTTGGCAAACTTTCGAATTTGAATAGACTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCAGAGTCATTTGGCAACATGGTCAAAGTTAAACATCTCCACATGAATAACAACTCGTTCTATGGTCAACTTCCTTCCACACTTTCAAAGCTGTCTAATCTTGTGCATTTGCTTGTGGACAACAATAACTTATCTGGTCACCTTCCATCGGATTTCTCTGTGTTACAACGGTTAAGAATACTCCAACTTAATAACAATAATTTCAATGGGCAAGAAATTCCTTCTACCTATGAAAACTTCTCCGATCTAACGAAACTAAGTCTGAGAAACTGTAGTCTGCAAGGAACTATTCCTGATTTCAGTTCAATAACCAACCTTATCTATTTAGACCTTAGCTGGAATCAGTTTACTGGAACTATACCATCAAATAAACTTGCAGACAATATGACTACTATTGATCTATCCAATAATTTTCTCGAAGGACCAATTCCTCTAAGCTTCATATACCCTAGGCTTCAAAAACTGTCACTTGAGAACAATTCTCTAAATGGATCAATCCCTGCTAGCATATGGCAGGACAGGGCATTCATTACTAAAGATAAACTTAAAATTAATCTCCAAAATAACTCGCTAGTCGACGTTTTGGGAAATCTGAACCCCCCAACAAATGTTACCTTGAGGCTTTCTGGCAATCCAATCTGCGAGAATTCTAACATAGAAAATATTGGTCAATATTGTGGAGATGAAGATGAAGATGAAGTAGTCCAAAACCCAAAAGATCCATCAAGTGTCTGTCTATTTCAAGATTGCCAAGTAGATAATTCCTATGAATTATATGTACCCTCTTTCCCAATTCCTTGCTATTGTGCAGCTCCTCTGATAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCATACTTTGCTCCCTATTTAGTAATGTTTGCATTATATATAACTGATTCCTTAAACTTAGAACACTATCAGATATCAATATCTTCTTCGGAAGATGGAAATCGTATCACCATGTATTTAAAACTATTCCCTTCGTATGATTCCCACTTAGACAAGTTCAACCAAAGTGATGTCTATCGCATTAAAACCAAATTTACATCATGGGAATTTCCTCCTAATCATTTCTTTGGACCATATGAACTCCTGAACTTCACTCTTGTTGGACCTTATGCAACTACTATTGATTCAAACAGGAGTAAACTTAATTCAGTCATATTGGTTGCTGCTATAATATCAGCTGTTGCCAGTATTTTAGCAACATCTGTGATCATTTTCCTGCTTTATAGAAGTCATGGAAAATATCAGCACATGAGTTCAAGGAAACATAAGTACCCTAATGTACATATTAAAATAGACAGTGTGAAAGAATTTAGTTTCATAGAACTGGCTATTGCTACGAACAATTTTAGCAGCTCAACTATAGTTGGCAAAGGAGGTTATGGGGATGTCCATAAAGGCATTTTATCTGGTGAAACAGTTGTGGCTATTAAACGAGCAGCAGAAGGTTCCTTACAAGGCCAAAAGGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTGAAAAAGCCAAGGAAAGACAAAATTTTGGTATGGGGTTGAAAATTGCATTGGGTGCAGCCAAAGGCATACTATATCTTCATACAGAGGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTCTAGACTCCAAATTTACAGCTAAAGTGGCTGATTTTGGACTTTCACTGCTTGCACCAGAAGGATCTGGTACTAAATTGTCAACTGTTGTGAAGGGAACACCAGGTTACCTTGACCCAGAATATGTATTGACTCAGAAGTTTACTGACAAAAGTGATATCTATAGTCTAGGAATTGTGTTTCTGGAGCTTTTGACAGGCATGCAGCCAATCTCACGTGGGAAACACATTGTTAACGAGGTTAACGCGGCTTGTCGATCTGGCCTGATATATTCTGTTATAGAGAGCCGAATGGGGTTATATCCATCACATTGCTTGGACAAGTTTTTATCTCTGGCCCTCAGATGTTGCCAAGATAAACCAGAGGAGAGGCCATCAATGCTAGACGTGGTGAGGGAACTAGAAGATATTGTTGCAATGCCATCAAGAAGTCATGAAGCTAGTTTCCCAGATGCTAGCATAGATAACTCAGGTGAAATGGCACCCTCATCATCTTTAGGATCTAATGCAGCAAGGGAGGATCAACACAAGTACGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCGTTGTTCCTCGCTAA 2844 0.3885 MPTLRIHGYAFAVLCCFIILTEASQTDPSEVNALIDIKKSLIDPKNNLRNWNSGDPCMANWTGIYCSDREEADGYFHVQKLYLMTMNLSGSLAPQLGQLSHLKILSFMWNSLTSTIPKEIGNILSLELLLLSGNKLSGSLPDELGKLSNLNRLQVDENQLSGPIPESFGNMVKVKHLHMNNNSFYGQLPSTLSKLSNLVHLLVDNNNLSGHLPSDFSVLQRLRILQLNNNNFNGQEIPSTYENFSDLTKLSLRNCSLQGTIPDFSSITNLIYLDLSWNQFTGTIPSNKLADNMTTIDLSNNFLEGPIPLSFIYPRLQKLSLENNSLNGSIPASIWQDRAFITKDKLKINLQNNSLVDVLGNLNPPTNVTLRLSGNPICENSNIENIGQYCGDEDEDEVVQNPKDPSSVCLFQDCQVDNSYELYVPSFPIPCYCAAPLIIGYRLKSPSFSYFAPYLVMFALYITDSLNLEHYQISISSSEDGNRITMYLKLFPSYDSHLDKFNQSDVYRIKTKFTSWEFPPNHFFGPYELLNFTLVGPYATTIDSNRSKLNSVILVAAIISAVASILATSVIIFLLYRSHGKYQHMSSRKHKYPNVHIKIDSVKEFSFIELAIATNNFSSSTIVGKGGYGDVHKGILSGETVVAIKRAAEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGKSEKAKERQNFGMGLKIALGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSLLAPEGSGTKLSTVVKGTPGYLDPEYVLTQKFTDKSDIYSLGIVFLELLTGMQPISRGKHIVNEVNAACRSGLIYSVIESRMGLYPSHCLDKFLSLALRCCQDKPEERPSMLDVVRELEDIVAMPSRSHEASFPDASIDNSGEMAPSSSLGSNAAREDQHKYAYVSGSNLVSGVIPTVVPR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02399 947 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Phco3g02399 947 SUPERFAMILY Protein kinase-like (PK-like) 602 899 IPR011009 -
Phco3g02399 947 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Phco3g02399 947 Pfam Protein kinase domain 619 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02399 947 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 213 307 - -
Phco3g02399 947 ProSiteProfiles Protein kinase domain profile. 617 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02399 947 SUPERFAMILY L domain-like 237 382 - -
Phco3g02399 947 PANTHER RECEPTOR-LIKE PROTEIN 55 37 888 - -
Phco3g02399 947 SMART serkin_6 617 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02399 947 MobiDBLite consensus disorder prediction 893 920 - -
Phco3g02399 947 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 693 899 - -
Phco3g02399 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Phco3g02399 947 Gene3D Phosphorylase Kinase; domain 1 578 692 - -
Phco3g02399 947 Gene3D Ribonuclease Inhibitor 189 391 IPR032675 -
Phco3g02399 947 Gene3D Transferase(Phosphotransferase) domain 1 693 904 - -
Phco3g02399 947 CDD STKc_IRAK 623 887 - -
Phco3g02399 947 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Phco3g02399 947 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 28 189 - -
Phco3g02399 947 FunFam Leucine-rich repeat protein kinase family protein 581 692 - -
Phco3g02399 947 SUPERFAMILY L domain-like 25 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02399 Phco-Chr3 50551813 50559676 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco3g02399 Pkinase 3.2e-46 CL0016