Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02394 ATGGAATGTTATATAGCTCAAAGGTGGAGAACAAGTGAAGATGCATACATATGTTTTCTGCAATATGCAGAGGAATCACAATCTTATCTGCGTAGCTTTCAAATTCCAGATTTACCTTTGTGTAATGAAAGAGAACACCTTCCAGAAATTTCAGATAAGGTTTGGCTGAATGAGGAAGAAGGCTTGAAGTTGAAGCTGAGACTTGAACCATTTAATACACTGCTCAACCCTCCTTACTGTGGATTCCACTTCCAGCTTGCTTTCCCTTTCTCCTGGTTTCAAGGGAAACAAGTGGACTTTGAAACCAGGCAACCAGTTCCATTCCAGCCTTTCATTTCAGGCACCCTGATTCAACAAATAAACTTGATGATGCTACAGTCCTACTTTACAACAATTCCAATTTTCCTACTCCTGCTTGTGTTTCCTCAAACTAAAGCTGATCTACACTCCGAAAAGCAAGCCCTTCTTGATTTTGCTGCTGCACTTCATCATGCTCCTAGAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGAGGGGAGTTACATGTAGTCATGATGGGTCCCATGTGCTTTCTGTGAGGCTTCCAGGTGTGGGACTGCGCGGTTCTCTCCCACCAAACACACTTAGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTCCCAACTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACCACTTCTCAGGTCATATTCCTGATTCTCTGCCACCCCGGCTTATATTTCTTGATCTGTCCCATAACTCTTTCACAGGAAAAATTCCAGCCTCAATCCAAAACTTGACACATCTAATAGGACTCAACCTCCAAAACAACTCTCTCACAGGATCTATTCCTGATGTTAACCTTCCTAGCCTTAAGAATTTAGATTTGAGCTTCAACTACTTGAATGGTTCTATTCCTTCATATTTCTGCAAGTTTCCTGGCTCCTCATTTAGAGGGAATTTGAAATTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTTTCCACTTCCTCCACATTGTCTCCCTCAACAGTCTCTCAAAGACCAAGTGATCCGTCAAACAGGAAAATGAGAAGGGGGGCAAAACTAGCAATTATTTTGGGGGTTGTCACATTGCTGTTTCTTCCAGGTCTTATGGTAGCGTTTTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTTGCGCCTACAGAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTCTTTGAAGGTTGTTCTTATAATTTTGATCTGGAGGACTTGTTAAGAGCTTCAGCTGAGGTGCTAGGGAAGGGAAGTTGTGGAACCACATATAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTCAAGAGGTTAAAAGAGGTGGCTATGGGGAAAAAAGAATTTGAACTGCAAATGGAGATTGTCCAAAGACTTGATCATCACCCAAATGTGATTCCCCTTCGTGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTACGACTACTCGACAGCCGGAAGTTTTTCAAAGTTATTGCATGGAACAAGGGAAACTGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATTGTGGTTGGAGCTGCAAGGGGCGTTTGTCATATTCACTCAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCACGATAGATCTCCAGGGATGTATATCAGATTTTGGCCTAACTCCCCTAACAAATTTCTGTGCCTCCTCTAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAAACAAGAAAGTCCACTCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGAGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGTTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCAGACTCAAGACCCTCAATGGTGGAAGTTGTTAGAACAATTGAAGAAATTACAGCTTGCATTTATTAA 2190 0.4219 MECYIAQRWRTSEDAYICFLQYAEESQSYLRSFQIPDLPLCNEREHLPEISDKVWLNEEEGLKLKLRLEPFNTLLNPPYCGFHFQLAFPFSWFQGKQVDFETRQPVPFQPFISGTLIQQINLMMLQSYFTTIPIFLLLLVFPQTKADLHSEKQALLDFAAALHHAPRVNWNSSTSICTSWRGVTCSHDGSHVLSVRLPGVGLRGSLPPNTLSKLNGLISLSLRSNSLRGNLPTDLLSLPSLRFVYLQHNHFSGHIPDSLPPRLIFLDLSHNSFTGKIPASIQNLTHLIGLNLQNNSLTGSIPDVNLPSLKNLDLSFNYLNGSIPSYFCKFPGSSFRGNLKLCGAPLKQCSSVSTSSTLSPSTVSQRPSDPSNRKMRRGAKLAIILGVVTLLFLPGLMVAFCCFKKKVGEQNVAPTEKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKEVAMGKKEFELQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTRETGRAPLDWDSRLKIVVGAARGVCHIHSANGRKLVHGNIKSSNVILTIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDSRPSMVEVVRTIEEITACIY 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02394 729 PANTHER OS05G0588300 PROTEIN 134 724 - -
Phco3g02394 729 FunFam pollen receptor-like kinase 1 422 529 - -
Phco3g02394 729 Gene3D Ribonuclease Inhibitor 149 260 IPR032675 -
Phco3g02394 729 Gene3D Ribonuclease Inhibitor 261 351 IPR032675 -
Phco3g02394 729 FunFam Probable inactive receptor kinase RLK902 148 305 - -
Phco3g02394 729 Gene3D Transferase(Phosphotransferase) domain 1 531 727 - -
Phco3g02394 729 SUPERFAMILY Protein kinase-like (PK-like) 458 721 IPR011009 -
Phco3g02394 729 SUPERFAMILY L domain-like 167 344 - -
Phco3g02394 729 Gene3D Phosphorylase Kinase; domain 1 421 529 - -
Phco3g02394 729 Pfam Protein kinase domain 457 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02394 729 Pfam Leucine rich repeat N-terminal domain 150 186 IPR013210 -
Phco3g02394 729 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Phco3g02394 729 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Phco3g02394 729 MobiDBLite consensus disorder prediction 351 374 - -
Phco3g02394 729 MobiDBLite consensus disorder prediction 351 369 - -
Phco3g02394 729 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 530 727 - -
Phco3g02394 729 ProSiteProfiles Protein kinase domain profile. 454 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02394 Phco-Chr3 50513855 50520219 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g02394 Pkinase 8.9e-35 CL0016