Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02390 ATGAATCGGTACTGTGTTTGTGTTCCATTGTTTGTGTGCCTGGTATTGGCTATTGAGCTTGTTGTAGCAAAGGATTTTCAGCCTACAGATAATATCCTGCTGGATTGTGGGGGTCCTCCATCTAGTACTGATACTGATGGCCGTGAATGGACCACTGATGTTGGTTCCAAGTTTGGTTCCTCCTCTTCAAAATCCACCACCGTATCGCCGGCGGCAACTCAAGACCCTGCCGTCCCCCAGGTGCCCTACATGACGGCACGCGTGTTCCACGCGCCGTTTACCTATGCTTTCCCGGTGGCTTCGGGTTGGAAGTTCCTCCGGCTGCACTTTTACTCGGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTTTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTGGCCTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCTATGTTGAAGGGAAAACCTTGAATGTGACTTTCACTCCGTCTACCAAGGCATCCAATGCTTACGCTTTTGTTAATGGGATTGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATAGTGGGTACAAATACTGCTTACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTGGGTGGGAATGATATCTCTCCCTCACATGATACTGGTATGTTTAGGTCGTGGTCTGATGATGTTCCCTTCCTCTTTGGGGCTGCATTTGGAGTTACCGAGCCTGCTGATCCAGATGTCAAGTTTGAGTATCCTCCGGGCACGCCAAGTTATATTGCTCCACTTGATGTCTACACTACAGCCAGATCAATGGGTCCGAATGCGAAGATCAACATCAACTACAACTTGACTTGGATCTTCAACATTGATTCTGGGTTTTCCTATCTAGTGAGACTCCATTTTGCTGAGGTATCATCTAATATAACCAAGAATAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACAGCTACCCAGGCTGATGTTATTGCCTGGGCAAACGAATTTGACCTTTCACATTCTAATGGGGTGCCTGTGCATAAAGATTATGTTGTCTTTGTTCCTGAGGATGTAGAACCACGGCAGGACCTGTGGCTTGCATTGCATCCAGATCCAACTGACAAGCCCATGTATTATGATGCAATCTTGAATGGAGTGGAGATATTCAAAATTAATGATACTGCAGGAAATCTGGCAGGGACAAATCCTATTCCTCCCCCTGTGCAAGACATAATCGACCCATCAACAGCTAGAGCACATAATCATGGTAAATCAAAGAATCATACAGGCATAATTGCAGGAGGTGTTGTTGGAGGAGTTGTAGTACTTGTGATTGGACTATTTGCTTTTGCTGCGTCCCGTCGTCGTAGACAAGGAAAGGATTCTGGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTAATTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCTCTCCCATCAAACCTTTGCCGTCATTTCTCATTTGCCGAAATCAAGTCCGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTGGGAGGATTTGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTAGCAATTAAACGTGGGAATCCACTATCTGACCAAGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTGATTGGATACTGTGAAGAAAACACTGAAATGATACTCGTTTATGATTATATGGCATATGGAACGCTAAGGGAGCATTTGTACAAGACCCAGAAGCCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACCGGTGCTAAATACACAATTATTCACCGTGATGTGAAGACAACAAACATTTTACTGGATGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTAAGTACTGTAGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTACTCATTTGGGGTGGTTCTCTTTGAGATATTGTGTGCTCGACCAGCTTTGAACCCGGCCCTAGCCAAGGAGCAAGTGAGTCTGGCCGAGTGGGCAGCTCATTGCTACCTCAAAGGCATTCTTGACCAAATCATTGATCCCTATCTAAAAGGCAAGATAGCTCCAGAATGCTTCAAGAAGTTCGCCGAGACTGCGATGAAGTGTGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCCTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAACGGCTTTGGCGGCATTGACAATGAAGTGGAGCCAACGTATACAGATTCTAAAGGAAAGAAAGACTCTGATGCGATGGGGGGTTATGATGGTAATGCGACTGACTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA 2688 0.452 MNRYCVCVPLFVCLVLAIELVVAKDFQPTDNILLDCGGPPSSTDTDGREWTTDVGSKFGSSSSKSTTVSPAATQDPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLHFYSASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIYVEGKTLNVTFTPSTKASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGTNTAYTIDNSTALENVYRLNVGGNDISPSHDTGMFRSWSDDVPFLFGAAFGVTEPADPDVKFEYPPGTPSYIAPLDVYTTARSMGPNAKININYNLTWIFNIDSGFSYLVRLHFAEVSSNITKNNQRVFDIFLNNQTATQADVIAWANEFDLSHSNGVPVHKDYVVFVPEDVEPRQDLWLALHPDPTDKPMYYDAILNGVEIFKINDTAGNLAGTNPIPPPVQDIIDPSTARAHNHGKSKNHTGIIAGGVVGGVVVLVIGLFAFAASRRRRQGKDSGASEGPSGWLPLSLYGNSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSDQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYLKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGGIDNEVEPTYTDSKGKKDSDAMGGYDGNATDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02390 895 CDD STKc_IRAK 543 809 - -
Phco3g02390 895 FunFam Receptor-like protein kinase FERONIA 614 824 - -
Phco3g02390 895 MobiDBLite consensus disorder prediction 820 895 - -
Phco3g02390 895 MobiDBLite consensus disorder prediction 37 73 - -
Phco3g02390 895 Gene3D Transferase(Phosphotransferase) domain 1 614 825 - -
Phco3g02390 895 SUPERFAMILY Protein kinase-like (PK-like) 511 810 IPR011009 -
Phco3g02390 895 FunFam FERONIA receptor-like kinase 216 411 - -
Phco3g02390 895 Pfam Malectin-like domain 34 410 IPR024788 -
Phco3g02390 895 Gene3D - 217 410 - -
Phco3g02390 895 Gene3D - 31 191 - -
Phco3g02390 895 FunFam Receptor-like protein kinase FERONIA 509 613 - -
Phco3g02390 895 MobiDBLite consensus disorder prediction 44 73 - -
Phco3g02390 895 ProSitePatterns Protein kinases ATP-binding region signature. 543 566 IPR017441 GO:0005524
Phco3g02390 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Phco3g02390 895 ProSiteProfiles Protein kinase domain profile. 537 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02390 895 Gene3D Phosphorylase Kinase; domain 1 522 613 - -
Phco3g02390 895 PANTHER OS03G0124300 PROTEIN-RELATED 7 479 IPR046957 GO:0004672
Phco3g02390 895 FunFam FERONIA receptor-like kinase 31 191 - -
Phco3g02390 895 Pfam Protein tyrosine and serine/threonine kinase 543 805 IPR001245 GO:0004672|GO:0006468
Phco3g02390 895 MobiDBLite consensus disorder prediction 854 888 - -
Phco3g02390 895 SMART serkin_6 537 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02390 Phco-Chr3 50479691 50482378 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Phco3g02390 Malectin_like 1.9e-40 CL0202