Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02386 ATGTTGAGTTCAGTCACTTATTTATGTGCCTTGCGGCTCCACAATTGTATTGAGCTGTCATTTCTGGAGGAAATAAATTGCCTTTTTTACACTTCTTGTTTTGTGAGAAGCAACCAACCAACATTGCTGAGAGCATTGCCTTGTTTGGAAATAACGGTCATGGCTTCTCTGCTTCCTTCAACCGCAACAACACTTCAACATAGTCGCACCATCTGCTTCTCTCCTCTGAAACTCAGCATCCCAATTACCATTCCCTTTTCGGCAAACCGTTTCAAGAGTAGCTCTGGAAAGTGCAATGCAGTTTTTGGTAACATTCCCAAAGACTTGTTGGAGACCACTTTTCACGTGGACCAGTTTTCTGTCTTCCAATCACTGTTAGTGAAGTTTCAGAATGTAACTGAAGATTTATCAGACATACAGAGGTGGGGGTTTGCGATACTTGCAGGGCTGACATGGGCCTATTTAACTGCAAGGCCGGGTGTTCTTGTCGGCGCCATTGATGCATTCCTTTTGGCCCCTATGCAACTGGTTTTGGACAGTGTATTCGGAAGGAGAAATCTCAAGAGTACTGATTTTCTTATTGGAGATAAACTAGGAGAAGGGTCATTTGGTATTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTACAAGAGTGGATGCAAAAAAATGGAAGAGGCAAGGTCACAAAGTTGGATACCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTGTGAGGAGTGGTTCAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAGCCAATTCACAGTTCACAAAGGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCATCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGAAGGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAACAAATAATGCGACAGATCATTACTTCTCTTAAGAAAATTCACGACACTGGAATTGTTCATAGGGATCTTAAGCCTGCCAACTTGGTAGTTACCGAACGGGGGCAGATTAAACTCATCGATTTTGGTGCTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTACCCCTTTGGATCGTGACTACTGTCCCCCTGAACTGTATGTTCTACCAGAAGAAACCACGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTACAAATAGCAATTCCAACCTTAAGGTCTTCAGCTGCTTTGAAGAATTTCAATTTGGAGATAAGAACATGTGGATATGATTTAAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTTCAAATTCTTGATAGTGACTCTAGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGAGGTTCCCAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTTTGGGTGGGGATCAGGCCGCCACAGTCCTTTCAAAACTAAGCTTTTAA 1656 0.4233 MLSSVTYLCALRLHNCIELSFLEEINCLFYTSCFVRSNQPTLLRALPCLEITVMASLLPSTATTLQHSRTICFSPLKLSIPITIPFSANRFKSSSGKCNAVFGNIPKDLLETTFHVDQFSVFQSLLVKFQNVTEDLSDIQRWGFAILAGLTWAYLTARPGVLVGAIDAFLLAPMQLVLDSVFGRRNLKSTDFLIGDKLGEGSFGIVYSGVLVPKNVDVQEWMQKNGRGKVTKLDTKSKDKVILKKVKVGIEGAEEFGDCEEWFNYRLSRAAPETCAKFLGSFVADKANSQFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESTMFGRVLKGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDLKPANLVVTERGQIKLIDFGAATDLRIGKNYVPNRTPLDRDYCPPELYVLPEETTSLPPEPIAAFLSPIMWQLNSPDLFDMYSAGIVLLQIAIPTLRSSAALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSRRGWDLATKLISKRGSQLRGRLSAAAALRHPYFLLGGDQAATVLSKLSF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02386 551 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 90 550 - -
Phco3g02386 551 Pfam Protein kinase domain 342 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02386 551 SUPERFAMILY Protein kinase-like (PK-like) 190 536 IPR011009 -
Phco3g02386 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Phco3g02386 551 Gene3D Phosphorylase Kinase; domain 1 180 302 - -
Phco3g02386 551 ProSiteProfiles Protein kinase domain profile. 192 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02386 551 SMART serkin_6 192 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02386 551 Gene3D Transferase(Phosphotransferase) domain 1 332 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02386 Phco-Chr3 50445199 50449294 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Phco3g02386 Pkinase 3.2e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02386 3 50445199 50449294 Phco3g02386 3 50445199 50449294 ECH
Phco1g02032 1 60097572 60100344 Phco3g02386 3 50445199 50449294 PCT