Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02379 ATGGACAACCTTGGCGTTTCTACTAGTCGTATGAAAGCAATTGAGGAGCTTCTCAGAGGTCATGATTGTGCTAAACAACTCAGGAGTGTCATCAATGGTAGTGGTGAAAATGGGTCTTCAGCAAACCCATTACTTGCTAAGAAACTCGTGAAGGAGGTGCTCATGTCCTTCACCAAGTCCCTCTTGCTCTTGAACAACAACCCCACTTCTGAATCTCATGATGACTCCGGTGTTCAAGTTTGGGACTCTCTCAAACATGAGGACTCTCAAGAGAGCAATTGCAAGAATTCCACCGTTAAAGCACGAAGAGGGTGTTACAAGAGAAGCAGAATGGAACAATTAAGAGAGGAGGAATCAGAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAGGAGATCCTGAATGCCAAATTCCCAAGGAACTACTATAGGTGCACTCACAGAGACCAGGGTTGCCCAGCAAAAAAGCAGGTGCAAAGAGTTCAGGAGGATCCAATCCTGTACAAGACCATCTACCATGGTGACCACACTTGCAAGAGCTTGGAAAACCCTCAGATTATACTTGACCCTGTGTCTCCTTCATCTTCTTCCATGTTCCTTAGCTTTAACAGCTCTTTTCCTACCCCATCCGAACAAGAGTGCCCCTTTCTCTCATCTTCTTTCACTTCATCTGTCAAAAGGGAGTGCAAGGAGGAGGTTCCTCCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGATTCACCAAGGCATGTCACTCTATCATCATCAACACTTGACTCAGAGTACAAGGGTGTGGACATTTCAGATGTCCTCTATGATTCTGCTCAACTTGATGATGTCTTTGAACCCTTCCTTGAATTTAGATAA 897 0.4493 MDNLGVSTSRMKAIEELLRGHDCAKQLRSVINGSGENGSSANPLLAKKLVKEVLMSFTKSLLLLNNNPTSESHDDSGVQVWDSLKHEDSQESNCKNSTVKARRGCYKRSRMEQLREEESEAPIDDGHQWRKYGQKEILNAKFPRNYYRCTHRDQGCPAKKQVQRVQEDPILYKTIYHGDHTCKSLENPQIILDPVSPSSSSMFLSFNSSFPTPSEQECPFLSSSFTSSVKRECKEEVPPSTSSNDYLISSDLTFDDSPRHVTLSSSTLDSEYKGVDISDVLYDSAQLDDVFEPFLEFR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02379 298 SMART WRKY_cls 123 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02379 298 ProSiteProfiles WRKY domain profile. 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02379 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 208 IPR044810 GO:0003700
Phco3g02379 298 Pfam WRKY DNA -binding domain 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02379 298 Gene3D WRKY domain 92 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02379 298 SUPERFAMILY WRKY DNA-binding domain 121 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02379 Phco-Chr3 50379733 50381281 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02379 WRKY 3.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02379 3 50379733 50381281 Phco3g02379 3 50379733 50381281 ECH