Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02350 ATGAGAGAGGCGCAGAACGACACCGTAGGGACCGAACTACCAAACACAAACTTCGACGTCCCATCCGGCGTCGTTTTGTTCGGGAAGTACGAGTTGAAGAGGTTACTGGGAGTTGGCGCGTTCGCCAAGGTGTACCACGCCATCACCGTCGACACGCGCCAGGGCGTGGCGGTGAAGGCCGTCAGCAAAAGCAAGGTCGTAAACGGAGGTTTTGCTGCCAACGTCGAACGCGAGATCTCTATCATGCGCCGCCTCCACCACTCCAACATCGTTAACCTCTTCGAAGTCCTCGCGACGAAGACGAAAATCTACTTCGTCATGGAGTTTGCAGCCGGCGGCGAACTCTTCCACGAGGTGGCCGGAAAGGGACGCCTGGAGGAGGACGCCGCCAGGTTTTACTTCCGGCAACTCATCTCCGCCTTGAAGCACTGCCATTCGCGGGGCGTGTTCCACCGCGACCTCAAGCTCGATAACCTCCTGCTCGACGAGAACGGAGACTTGAAAGTCTCGGATTTCGGGTTGAGTGCGGTCACTGGTCAGATCCGACCCGACGGGTTGTTACACACGGTTTGTGGGACCCCTGCCTACGTCGCACCCGAGATTCTCGTGAAGAGAGGCTATGATGGTGCGAAAGTGGATCTGTGGTCTTGCGGCGTCGTTTTGTTTGCGCTTACTGCAGGTTATTTACCCTTCAATGATTGCAACGTCACCGTTCTGTACAGAAAGATTTACCGCGGTCAATTCCGGTTCCCTAGGTGGATGTCTAGTGATCTGAGGATTCTCTTATCACGCTTGCTGGACACAAATCCCGAAACCAGGATTACCATTCATGAGATCTACCAGAACACCTGGTTCAACGCGGGTGAACACCGGTATAACCCGGTTCGGGTCAAGAAGAGTGAATGCGTATGTGCGGAGAGCCAAACCGGGTTCAATTCGCTTAACGCGTTTGACCTAATTTCTTTTTCGACCGGGTTGGACATGTCGGCTCTTTTCGAGGATCCGAACGTGTCAGATTCCGTGGAGCGGGTTGTTTGCGCGACGGAGCCGGAGAATATTATAGAGAGGGTGGAGGCAGTGGCGGAGGAGGGGAGGGTGGTGGTGAGGAGGGAGGGGAACGGTGGTGGGGCGAAGTTGGAAGGGCAGGATGGTAATTTGATAGGTATCGTAGAGGTTTACCGGTTAACGGAGGAGCTGGTAGTGGTTGAAATGAAGAGGAGTGAGAAGGGAGGGGAATGTGGCGCGCAGTTTTGGAAAGATAAACTGCGCCCTCTGCTTCTTGAATTTGCTGGTGAACGAGAAGTGCCGGTTTCCGGTGACTTCTGTAAAATATAG 1335 0.5438 MREAQNDTVGTELPNTNFDVPSGVVLFGKYELKRLLGVGAFAKVYHAITVDTRQGVAVKAVSKSKVVNGGFAANVEREISIMRRLHHSNIVNLFEVLATKTKIYFVMEFAAGGELFHEVAGKGRLEEDAARFYFRQLISALKHCHSRGVFHRDLKLDNLLLDENGDLKVSDFGLSAVTGQIRPDGLLHTVCGTPAYVAPEILVKRGYDGAKVDLWSCGVVLFALTAGYLPFNDCNVTVLYRKIYRGQFRFPRWMSSDLRILLSRLLDTNPETRITIHEIYQNTWFNAGEHRYNPVRVKKSECVCAESQTGFNSLNAFDLISFSTGLDMSALFEDPNVSDSVERVVCATEPENIIERVEAVAEEGRVVVRREGNGGGAKLEGQDGNLIGIVEVYRLTEELVVVEMKRSEKGGECGAQFWKDKLRPLLLEFAGEREVPVSGDFCKI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02350 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Phco3g02350 444 CDD CIPK_C 315 426 - -
Phco3g02350 444 Gene3D Phosphorylase Kinase; domain 1 23 114 - -
Phco3g02350 444 FunFam Aurora kinase A 24 113 - -
Phco3g02350 444 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Phco3g02350 444 Gene3D Transferase(Phosphotransferase) domain 1 115 290 - -
Phco3g02350 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 25 407 - -
Phco3g02350 444 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Phco3g02350 444 Gene3D Kinase associated domain 1, KA1 309 430 - -
Phco3g02350 444 SMART serkin_6 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02350 444 SUPERFAMILY Protein kinase-like (PK-like) 26 296 IPR011009 -
Phco3g02350 444 FunFam CAMK family protein kinase 25 321 - -
Phco3g02350 444 Pfam NAF domain 312 369 IPR004041 GO:0007165
Phco3g02350 444 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02350 444 ProSiteProfiles Protein kinase domain profile. 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02350 Phco-Chr3 50094949 50096283 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco3g02350 Pkinase 4.2e-70 CL0016