Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02307 ATGAGGCAGCTCAGTCAAAGCCACAAGATATCTTTCTCTCACCTTCTTTCCTTTCCAACAATAGTAACAAACAACAATACTAGTAACATGACCATGGGTGATCATAATAACAACTGGGGAACTTCTGAATTTAATCATCATCAAGTTGGACTTCTCGATGTTCCAAAATTCAAGTCTGCTCAACCTCCCTCACTACCCGTCTCTCCCTCTCCAGCCTCCCCTTCTTCTTACTTGGCCTTTTCATCTGCTTTCAGCCCATCTGAGTTCTTCAACTCTTCTTTGTTTTCTCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGTTGGCCAGACCTTCAACTGGAGGAACGGTTCCGGAGAAGAACAACAACGTGACAAGGAGGATGAGAAAAACTACTCGGACTTCTCTTTCCAAACTCAAATTCAATCTTCCTCAGGCATGTTTCAAGTGCAGGAACCACCTAAGAAACAAGATATATGGAAATTCAATGAACCTTCAAAGCGAACTGATTTTTCATCTGATAGGACAGCAACAAAATCTGAATACCCTTCAATTCAGAGGTTTTCCTCAGAAATGGCATCAGACAAATCAGAATTACAAAGTAATTCAGTTCCTGGATCTAGTCGTTTTGATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTAGAGATGTCTTTGGATGGCCAAATTACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTACTAGAAGAACAAACTCTCAATCAATTTATCAACCTTCTTCATCTTGCACAAACTCGGGGATTTCTGATCAATCAGTGGTGACCCTTGGCAATCCACAAATGGATCATTTCTCCATGCAGGAAGATTCTTCAGCTTCCGTAGGAGAGGAAGAGCTTGAGCAAACATCCCAAACCAGTTATTCTGGGGGAGATCAAGATAACCTTGGACCAGAGGCCAAACGATGGAAAGGAGATAATGAAAACGATGACTATTCCGCTTCAGGAAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAGAAATTCTCTGAACAGCAACATATCGGCTCCTATAAGACCCTCGGCAGTGAACTGTTATTCTAGCTCATCAGGTTTCAAAAATTCTCTCTACACTAATACCAGGCTTCCAGCAACCGGAAATCAAGAATCGTTTTCACAGGACAAGTTCCAGCACCCAGGAAGTTTTGGCCATTCGGCTCTTAACAAATCAATGGCTTCATATACCGATCATGCACCATACTCAGATGCTGCACACTCAAATGCCAAGGATGAGAAGAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA 1707 0.4189 MRQLSQSHKISFSHLLSFPTIVTNNNTSNMTMGDHNNNWGTSEFNHHQVGLLDVPKFKSAQPPSLPVSPSPASPSSYLAFSSAFSPSEFFNSSLFSPSPNIFASPTTEALVGQTFNWRNGSGEEQQRDKEDEKNYSDFSFQTQIQSSSGMFQVQEPPKKQDIWKFNEPSKRTDFSSDRTATKSEYPSIQRFSSEMASDKSELQSNSVPGSSRFDYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEMSLDGQITEIVYKGHHNHPKPQSTRRTNSQSIYQPSSSCTNSGISDQSVVTLGNPQMDHFSMQEDSSASVGEEELEQTSQTSYSGGDQDNLGPEAKRWKGDNENDDYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNSLNSNISAPIRPSAVNCYSSSSGFKNSLYTNTRLPATGNQESFSQDKFQHPGSFGHSALNKSMASYTDHAPYSDAAHSNAKDEKKDDSFLQSFLSKDF 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02307 568 MobiDBLite consensus disorder prediction 280 381 - -
Phco3g02307 568 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 MobiDBLite consensus disorder prediction 289 354 - -
Phco3g02307 568 Pfam WRKY DNA -binding domain 229 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 MobiDBLite consensus disorder prediction 165 233 - -
Phco3g02307 568 MobiDBLite consensus disorder prediction 358 378 - -
Phco3g02307 568 FunFam WRKY transcription factor 217 288 - -
Phco3g02307 568 Gene3D WRKY domain 384 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 SMART WRKY_cls 228 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 SMART WRKY_cls 397 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 Gene3D WRKY domain 214 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 MobiDBLite consensus disorder prediction 179 222 - -
Phco3g02307 568 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 138 475 IPR044810 GO:0003700
Phco3g02307 568 SUPERFAMILY WRKY DNA-binding domain 224 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 ProSiteProfiles WRKY domain profile. 223 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02307 568 FunFam WRKY transcription factor 33 384 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02307 Phco-Chr3 49533906 49536671 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02307 WRKY 1.1e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02307 3 49533906 49536671 Phco3g02307 3 49533906 49536671 ECH