Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02280 ATGATGTCAAGTGTTGATTGGTCCATATGCATTGTCTGGTTTCTTCTCTTCTCTTCAAACTTTTGGTCTCAAAATATAGTAACTACCTATGCATTGGGAAATGAGACCGATCAATCTGCACTGCTCAAATTCAAAGAATCAATATCTATTGACCCTTTTGAAGTGCTCAACTCTTGGAATAGTACAAGCCACTTTTGCAAGTGGTATGGAGTGACATGCAGTCCCCGACACCAAAGAGTTATAAAGCTAAATCTAACAGGATATCACTTGCATGGTGTCATATCACCCCACATTGGTAACCTTTCGTTTTTGAGAATCCTCTTCCTCGAGGACAATCACTTCTATGGTGAAGTTCCACAAGAATTGGGGCGTTTGTTCAGGCTACGTACACTCTATTTCACTAAGAACTCCTTAGGGGGAGAATTTCCAATCAACTTGACAAATTGTTCTAAACTGAGCTATTTAAGTTTAGATAGAAATCTTTTCATTGGTGAAATACCAAGGAAGATTGAATCCTTTGGCAATCTTAAACAGTTGAGAATTCGTGGGAACAATCTAACTGGACAAATCCCACCTTCCATAGGAAATTTATCTTTCCTCACTCAACTTTCATTGAGTTCAAATAAATTGGAGGGGTACATTCCAAAAGAAATAGGCATTTTGAAAAATTTGAGAATATTGGGCTTGTCAGATAATCAACTATCTCACAATATTCCACTTTCCTTGTACAATCTGTCATCTCTCTATGTCTTCTCACTCACAGGCAATCAATTTAATGGTTCTTTTCCAGTCAACATGTTCCTCACCCTACCTAATCTTCAAGTTTTTACAGTGAGTGGGAATCAATTCTCAGGTTCAATCCCAGCTTCCATCACTAATGCATCTGGGATGCAAATATTGGATATTGGTGACAACCATTTGGTAGGACAAGTCCCAAGTCTAGGGAAATGGAAAGATATTTCAACTCTGCAGCTAAGTTTAAATAATCTGGGTAGCAATTCATCTAATGACTTGCGATTTTTAAAGTCTTTGATAAATTGTAGTCAGCTGGATATATTAGATATAGGGCACAATAATTTTGGAGGGCCTTTTCCTAGGTATGTGAGCAATCTTACCAGCCAACTCAGCCAACTAATTGCTGGTGGTAATAATTTTTTTGGAGAAATTCCTATGGAATTAGGAAATCTTGTTAACTTGATTACCTTGGCTTTGGAAAAAAATAGCCTAACTGGCATCATTCCAACTACTCTTGGTAAGCTTCAAAAGATGCAATTATTAAGTTTGGGAGTAAACAAATTGTTTGGAGAGATACCTCCTTCCATAGGCAATCTGAGTCGGTTGTATTACCTAGAATTGTCATCCAATATGTTTGTTGGAAATATTCCTTCAACCATTGGAAATTGCCAACTTTTACAATTTCTAAATCTTTCAAATAATAGTATTAGTGGAGCCATACCATCACAACTGTTTGGTATTCCCTCTTTATCTACTGCACTGGACCTATCATATAACTCATTGAGTGGCAGTCTACCAGAAGAAGTGGGCATGTTGAAAAATATTGACTTGCTGAATGTGTCTGAAAATTATATCTCTGGTGTCATTCCTGAAACAATTGGAGAATGCATAACCTTGGAGTACCTTCATTTAGAGGGTAACTCCTTCCATGGAAGCATGCCTCCTTCCTTGGCTTCCTTAAAAGGTCTCAGAGAATTAGACCTTTCAAGAAACAACTTGTCTGGATCAATTCCGGAAACACTGCAAAACCTTTCTTTTCTAGAATACTTCAATGCTTCTTTCAACATGTTGGAGGGTAAGGTGCCAACGAATGGTGTCTTTCAAAATGCTAGTTCAATTTCAGTGACTGGCAATAGCAAGCTTTGTGGTGGGATATCTGAACTAAAGCTTCCACCTTGCCCTTTAAAAGCTAAGAAAAGAAGAATACACCATAATCTCATGTTAGTAGTGGCGATATCCTGTCTGGTTTTTTTTCTTGCTACACTATCATGTGTCCTCGGTATGTATTTGATAAGGAAAAGGCACAAAAAGTCATCGACCAATTCAACAATTGATCAACTTCCTAAGGTATCATACCAGAACCTACACCATGCAACTGATGGGTTCTCATCTTGGAACTTGATAGGAATAGGAAGTCATGGGTCTGTATATAAAGGAATTCTTGATTCGATGGAAGGATTTGTTGCTATAAAGGTTCTAAACCTTCAAAATAAAGGGGCTAAGAAAAGTTTTATGGCTGAATGCAAAGCATTAAGAAATGTACGGCATAGAAACCTAGTGAAGGTTGTCACATGTTGCTCTAGTGTGGATTACAATGGAAATGATTTTAAAGCTTTAGTGTTTGAGTATATGTCAAACAGAAGCTTAGAGGAATGGTTGCATCCAGAAAATGGAAGAGCAGAACAACCAAGAACTTTGAACCTTGAGACAAGATTAGAAATTGTGGTTGGTGTTGCTTCTGCACTACACTATCTTCACCATGAGTGTGAGCAACCTATTATTCATTGTGATTTAAAGCCAAGTAATATTCTTCTTGATGATGACATGGTTGCTCATGTTAGCGATTTTGGCTTAGCAAGACTTCTCTCAACAATCAACAACTCTCACAGCCTTAGCACAAGTGGAATAAAAGGGACTATAGGTTATTCTCCCCCAGAGTATGGAGCAAGTTTTCAGGTGTCAACAAAAGGTGACATCTACAGTTTTGGTATTCTAATTCTGGAGATGTTAACTGGGAGACGACCGACAGAAGAAATGTTTAAAGATGGACACAACCTTCATAACTATGCTAAAATTTCATTTCCAAATAACTTGTTGGATATTGTTGATGCAACTCTTGTTCCAATGCAAAATGAATCTTCTACAATGACACTAACAGAACAGCACAACATCTCCGAGATTGTAGATAATTTTCATACTAATACCAAGAAGTGTTTATTTTCATTATTTAAGATTGGTCTAGCTTGCTCAGTGGAGTCACCAGGAGAAAGGATGCATATGATGGAAGTCACCAGGGAGCTAAATATGATTAGAAATGCTTTCTATGCTCGACGAATCAGAGATGTCTCTTCCTGGGCGAGCTTGATGATCCTCCCCAACCGAAGCCCCTATGATGATGTTACCCCTCACTTTGATGGGTCTTGCTTAGGTTGCTTCAGCAACACTCACTGCGCCAACGCGTTCTCTCTCTCTCTTGTTCTCCGATCGCCGTTTTCACCTTTTCTGTTTTTTTTTTTTTTTTTTAAATTTCTGATTGTGTACCATCTCACTGTTCTTGTGGTTTCTGAATCGTATTTGCCATGCCAATAA 3324 0.3809 MMSSVDWSICIVWFLLFSSNFWSQNIVTTYALGNETDQSALLKFKESISIDPFEVLNSWNSTSHFCKWYGVTCSPRHQRVIKLNLTGYHLHGVISPHIGNLSFLRILFLEDNHFYGEVPQELGRLFRLRTLYFTKNSLGGEFPINLTNCSKLSYLSLDRNLFIGEIPRKIESFGNLKQLRIRGNNLTGQIPPSIGNLSFLTQLSLSSNKLEGYIPKEIGILKNLRILGLSDNQLSHNIPLSLYNLSSLYVFSLTGNQFNGSFPVNMFLTLPNLQVFTVSGNQFSGSIPASITNASGMQILDIGDNHLVGQVPSLGKWKDISTLQLSLNNLGSNSSNDLRFLKSLINCSQLDILDIGHNNFGGPFPRYVSNLTSQLSQLIAGGNNFFGEIPMELGNLVNLITLALEKNSLTGIIPTTLGKLQKMQLLSLGVNKLFGEIPPSIGNLSRLYYLELSSNMFVGNIPSTIGNCQLLQFLNLSNNSISGAIPSQLFGIPSLSTALDLSYNSLSGSLPEEVGMLKNIDLLNVSENYISGVIPETIGECITLEYLHLEGNSFHGSMPPSLASLKGLRELDLSRNNLSGSIPETLQNLSFLEYFNASFNMLEGKVPTNGVFQNASSISVTGNSKLCGGISELKLPPCPLKAKKRRIHHNLMLVVAISCLVFFLATLSCVLGMYLIRKRHKKSSTNSTIDQLPKVSYQNLHHATDGFSSWNLIGIGSHGSVYKGILDSMEGFVAIKVLNLQNKGAKKSFMAECKALRNVRHRNLVKVVTCCSSVDYNGNDFKALVFEYMSNRSLEEWLHPENGRAEQPRTLNLETRLEIVVGVASALHYLHHECEQPIIHCDLKPSNILLDDDMVAHVSDFGLARLLSTINNSHSLSTSGIKGTIGYSPPEYGASFQVSTKGDIYSFGILILEMLTGRRPTEEMFKDGHNLHNYAKISFPNNLLDIVDATLVPMQNESSTMTLTEQHNISEIVDNFHTNTKKCLFSLFKIGLACSVESPGERMHMMEVTRELNMIRNAFYARRIRDVSSWASLMILPNRSPYDDVTPHFDGSCLGCFSNTHCANAFSLSLVLRSPFSPFLFFFFFFKFLIVYHLTVLVVSESYLPCQ 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02280 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Phco3g02280 1107 Gene3D Ribonuclease Inhibitor 33 315 IPR032675 -
Phco3g02280 1107 PANTHER OS04G0122200 PROTEIN 221 1016 - -
Phco3g02280 1107 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Phco3g02280 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 339 - -
Phco3g02280 1107 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 789 1025 - -
Phco3g02280 1107 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 644 - -
Phco3g02280 1107 Gene3D Phosphorylase Kinase; domain 1 671 788 - -
Phco3g02280 1107 SUPERFAMILY L domain-like 34 330 - -
Phco3g02280 1107 Pfam Leucine rich repeat 543 602 IPR001611 GO:0005515
Phco3g02280 1107 Pfam Leucine rich repeat 175 234 IPR001611 GO:0005515
Phco3g02280 1107 ProSiteProfiles Protein kinase domain profile. 707 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02280 1107 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 788 - -
Phco3g02280 1107 SMART LRR_typ_2 396 419 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 221 245 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 173 197 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 565 588 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 420 444 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 101 125 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 270 294 IPR003591 -
Phco3g02280 1107 SMART LRR_typ_2 492 517 IPR003591 -
Phco3g02280 1107 ProSiteProfiles Leucine-rich repeat profile. 567 590 IPR001611 GO:0005515
Phco3g02280 1107 Gene3D Ribonuclease Inhibitor 316 639 IPR032675 -
Phco3g02280 1107 Pfam Protein kinase domain 711 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02280 1107 Gene3D Transferase(Phosphotransferase) domain 1 789 1028 - -
Phco3g02280 1107 SUPERFAMILY Protein kinase-like (PK-like) 680 1012 IPR011009 -
Phco3g02280 1107 SMART serkin_6 707 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02280 1107 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Phco3g02280 1107 SUPERFAMILY L domain-like 373 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02280 Phco-Chr3 49235034 49244049 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco3g02280 Pkinase 1.5e-42 CL0016