Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02262 ATGGAAGAAGAGAGACACGTCTCCGAATGTTCCAAGACAAGCCCTTCTAACGAAGAAGTTTGTGAAGATAGTGATGAGGAGAATGAAGGTGGGAGTAAGCAGAACAACAATGGAGGAAGCTCAAGCAACAGCACCGTGGAAGAGAACGAGAAGAAGGCAACAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTGGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGGCAAATCAAGTATTGGGTGATCCTAGGCTCCTTGTAGAAACTGGAGCCACCAACGTTTACAATCTTAGCCAAATTCCCATGCTTCAAGGCTACAATCCAAGCCAAACTTCAACATTCAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGAAAAGGCCTTGCCCGAATAGGAGTTCAGCAGATGAATCTGGAGCTGAATTTTGTGGCAGCAAATTGACTGAGAGGACTCATGGGACCAATAGTAACATCAATTGGAGTCATAATATGCTCCAAGTTGATTGTTCCAGTTTTAATGAACCATCAACAAATAAAGTCCACGAACCAAAACACAAGTTCTTCTCGTTTGGTGGCAATGAATCCTTATGCACACAAATCAAAATGAGCCAAGATGATCTACATCAATCAACACAAATGCAAGAGCTCATGCCAAACAATAAGATGACTACAAATCAGGTGGAACTAAACAGCTTAAAAAGGAAGGCTTCAGATACTTACATTGATTTGAATCTATCACTTAAATTAAGTTCAAGGGTCAGTGCTGATGACCAGGGAAGCATGGTGGACCATGAAATTGATAGCAATCTATCACTGTCTTTGTGTTCTCAATCCTCCTCCTCTTATCTTAGCAGTAGGTTGAGAAAATCACAAGATCATTCTAAGGAGCAAGGGGAAAGAGCCAGAACATTGGATCTCACTATATGA 1080 0.4167 MEEERHVSECSKTSPSNEEVCEDSDEENEGGSKQNNNGGSSSNSTVEENEKKATVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEANQVLGDPRLLVETGATNVYNLSQIPMLQGYNPSQTSTFRYGYGDASLAIYENMVKRPCPNRSSADESGAEFCGSKLTERTHGTNSNINWSHNMLQVDCSSFNEPSTNKVHEPKHKFFSFGGNESLCTQIKMSQDDLHQSTQMQELMPNNKMTTNQVELNSLKRKASDTYIDLNLSLKLSSRVSADDQGSMVDHEIDSNLSLSLCSQSSSSYLSSRLRKSQDHSKEQGERARTLDLTI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02262 359 MobiDBLite consensus disorder prediction 339 353 - -
Phco3g02262 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 64 119 IPR006447 GO:0003677
Phco3g02262 359 Gene3D - 63 121 - -
Phco3g02262 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 244 IPR046955 GO:0003700
Phco3g02262 359 MobiDBLite consensus disorder prediction 336 359 - -
Phco3g02262 359 FunFam Myb family transcription factor 62 120 - -
Phco3g02262 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 120 IPR017930 -
Phco3g02262 359 MobiDBLite consensus disorder prediction 31 48 - -
Phco3g02262 359 MobiDBLite consensus disorder prediction 1 19 - -
Phco3g02262 359 SUPERFAMILY Homeodomain-like 63 118 IPR009057 -
Phco3g02262 359 MobiDBLite consensus disorder prediction 1 56 - -
Phco3g02262 359 Pfam Myb-like DNA-binding domain 66 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02262 Phco-Chr3 49057173 49058705 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco3g02262 Myb_DNA-binding 1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02262 3 49057173 49058705 Phco3g02262 3 49057173 49058705 ECH