Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02259 ATGGAGTGCATCAGCCCTACCTCTTGTGAAGGGTCATCATCCAAGAACAAGAGCAAGGAGAAAAAGGGTGTGAAGAAAGGCAACAAGGGAGGGGTGAAGCTTTCCACTGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTTAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACAGTGTCCATGTTGGAGGGAGCCATTCACTACGTCAAGTTCCTCAAATCCCAGATTTGGCTCCACCAAGCATTGATAAACTTTGTAGATATTGATCATCATGAGGCTCCCGTGCACCTCCCGGCAGAGTATAATCTCCCTCATGAAAATTCCATTTCTCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCAGCAGAGTCTACCACAGCCACCACTATCACAGTGCTGCTTCCAAGGTGAAGAAGATTGTAACACCTTTGATGCCACTATGAAATATTGGCCAGCTTAG 498 0.4759 MECISPTSCEGSSSKNKSKEKKGVKKGNKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKSQIWLHQALINFVDIDHHEAPVHLPAEYNLPHENSISLQQNPSSVSVHSQQSLPQPPLSQCCFQGEEDCNTFDATMKYWPA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02259 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 97 IPR036638 GO:0046983
Phco3g02259 165 Gene3D - 39 91 IPR036638 GO:0046983
Phco3g02259 165 MobiDBLite consensus disorder prediction 1 47 - -
Phco3g02259 165 CDD bHLH_AtIND_like 35 94 - -
Phco3g02259 165 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 151 IPR045843 GO:0003700|GO:0006355
Phco3g02259 165 FunFam Transcription factor LAX PANICLE 37 100 - -
Phco3g02259 165 SMART finulus 40 89 IPR011598 GO:0046983
Phco3g02259 165 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Phco3g02259 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02259 Phco-Chr3 48997165 48997662 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g02259 HLH 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02259 3 48997165 48997662 Phco3g02259 3 48997165 48997662 ECH
Phco3g02259 3 48997165 48997662 Phco1g01367 1 38753839 38754330 PCT