Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02210 ATGTTAGAGATTATTCTAACCTCCATGACATCAATGTTGTTTTATGCCTTATTGAGTACTACTTATACTAATACATATACACATTCTTCAAGTTTGTATTTTTACTCTCTTTCTCCACCCTCTCTGATCAATTCCCATGGTCTTTCTCTCCAATTCCATCTAGCTTCCCCAAATCCCAGGCCCTTTCGCTTAGATCTCAATTGGGTTATGGACATGGCTTCCAGTCCGCGCACCGTTGAGGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGCTGTTATTCGCGCTCTCACTCATGACGTTGATGAATTTTACGGACTTTGCGATCCAGATAAGGATAACTTGTGCCTCTATGGACACCCGAATGAGGCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCCGAGCCGGCCCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGATTGGCTTTCTCTGGTCGCTGTGCACAGTGACTCGTGGTTGGTTTCTGTGGCCTTCTACCTTGGGGCTCGTCTTAATCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGAAAGGAAACCAGTTAAGGACAAGCCCACTGTGGATAGTGGAAGCAAGTCTCGGGGAAGCACCAAGAGAGCCAATGATGGGCAAGTCAAAAGCACCCCAAAGTTTACTGCGGATGAGGGTTACGAGGAGGATGAAGATGAGCACAACGAAACACTGTGTGGAAGCTGTGGTGGAAATTACAATGCCGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCTGCAAAGGCTGAGAGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAG 930 0.472 MLEIILTSMTSMLFYALLSTTYTNTYTHSSSLYFYSLSPPSLINSHGLSLQFHLASPNPRPFRLDLNWVMDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTERKPVKDKPTVDSGSKSRGSTKRANDGQVKSTPKFTADEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02210 309 CDD PHD_AL_plant 255 305 IPR044104 -
Phco3g02210 309 MobiDBLite consensus disorder prediction 217 235 - -
Phco3g02210 309 FunFam PHD finger alfin-like protein 248 304 - -
Phco3g02210 309 Pfam PHD-finger 256 303 IPR019787 -
Phco3g02210 309 ProSiteProfiles Zinc finger PHD-type profile. 253 305 IPR019787 -
Phco3g02210 309 Pfam Alfin 78 203 IPR021998 GO:0006355|GO:0042393
Phco3g02210 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 303 IPR013083 -
Phco3g02210 309 PANTHER CPG BINDING PROTEIN 75 308 IPR045104 GO:0006355|GO:0042393
Phco3g02210 309 SMART PHD_3 255 303 IPR001965 -
Phco3g02210 309 MobiDBLite consensus disorder prediction 209 246 - -
Phco3g02210 309 ProSitePatterns Zinc finger PHD-type signature. 256 302 IPR019786 -
Phco3g02210 309 SUPERFAMILY FYVE/PHD zinc finger 244 307 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02210 Phco-Chr3 48354123 48357486 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco3g02210 Alfin 2.5e-66 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02210 3 48354123 48357486 Phco1g01411 1 47308422 47311090 PCT
Phco1g01433 1 48985895 48986293 Phco3g02210 3 48354123 48357486 PCT