Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02205 ATGGGAAACTGCTGCAGATCCCCGGCCGCCGTGGCCCGCGAGGACGTCAAATCGAGCTTCTCCAACGCCGACCACCATGGCAAGCGTGGTTCCGGCGCTGAAGCTGTCAAACAGAAGGCACCGATCACGGTACTCGCCGGTGTGCCCAAGGAGAACATCGAGGACCGCTACCTCGTCGACCGCGAGCTCGGCCGCGGGGAGTTCGGCGTGACTTACCTCTGCATCGACCGCGACACGCGCGAGCTGCTCGCGTGCAAAAGCATATCCAAGAGGAAGCTCAGGACTGCCGTCGACGTCGAGGACGTCCGCCGCGAGGTAGCCATCATGCGCCACCTGCCTGAGAGCCCCAGCATCGTGTCACTCCGCGAAGCCTGTGAGGACGACAATGCGGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCGCTCGCGGTCACTACACCGAGCGCGCTGCTGCCGCTGTCACTAGGACGATTGTGGAGGTCGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGCGACCTGAAACCGGAGAATTTCTTGTTTGCAAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTCGGGCTTTCCATATTCTTCAAGCCAGGCGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCGCCAGAAGTTCTCAAGCGGAATTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTCTACATCTTACTGTGTGGTGTTCCCCCGTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAAGCCATTCTACGAGGACTTATAGATTTCAAAAGGGAACCTTGGCCAAGTATTTCTGAAGGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGCTCCAAAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATAATGATAATGATGGCATTGTTTCCATAGAAGAACTGAAAGCTGGATTTCGAAACTTTGGGTCTCAACTTGCTGAGTCTGAAATTCAGTTGCTTATTGAAGCTGTAGATAGTAATGGTAAGGGAACGCTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGAGCATCTTCGTAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCCTTGATGGAAGATGGAGCAGATGATTGTACAGATGTAGCAAATGATATTTTCCTAGAAGTAGACACGGATAAGGATGGACGTATCAGCTACGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAGGCATCAAGGCATTATTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1596 0.4881 MGNCCRSPAAVAREDVKSSFSNADHHGKRGSGAEAVKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPESPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISEGAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEIQLLIEAVDSNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFLEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02205 531 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Phco3g02205 531 FunFam Calcium-dependent protein kinase 1 59 142 - -
Phco3g02205 531 Gene3D Phosphorylase Kinase; domain 1 58 142 - -
Phco3g02205 531 Pfam EF-hand domain pair 361 421 IPR002048 GO:0005509
Phco3g02205 531 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Phco3g02205 531 FunFam Calcium-dependent protein kinase 7 324 499 - -
Phco3g02205 531 CDD STKc_CAMK 56 314 - -
Phco3g02205 531 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02205 531 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Phco3g02205 531 FunFam calcium-dependent protein kinase 13 143 323 - -
Phco3g02205 531 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Phco3g02205 531 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Phco3g02205 531 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02205 531 CDD EFh 434 496 IPR002048 GO:0005509
Phco3g02205 531 SUPERFAMILY Protein kinase-like (PK-like) 46 340 IPR011009 -
Phco3g02205 531 Pfam Protein kinase domain 59 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02205 531 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Phco3g02205 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 491 - -
Phco3g02205 531 MobiDBLite consensus disorder prediction 16 35 - -
Phco3g02205 531 MobiDBLite consensus disorder prediction 18 33 - -
Phco3g02205 531 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Phco3g02205 531 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Phco3g02205 531 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Phco3g02205 531 SMART efh_1 470 498 IPR002048 GO:0005509
Phco3g02205 531 SMART efh_1 398 426 IPR002048 GO:0005509
Phco3g02205 531 SMART efh_1 434 462 IPR002048 GO:0005509
Phco3g02205 531 SMART efh_1 362 390 IPR002048 GO:0005509
Phco3g02205 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Phco3g02205 531 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Phco3g02205 531 Gene3D - 324 499 - -
Phco3g02205 531 SUPERFAMILY EF-hand 344 522 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02205 Phco-Chr3 48308193 48315861 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco3g02205 Pkinase 1.1e-73 CL0016