Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02193 ATGAATCATCCTTGTGCAAACTCTAGGGGCCTGTTGTCACAAATCCTGAATAGATGTCTTCTAGTATGCATGATCTTAATCAAGGAATCAGCAATTGCGGCAACTCCTGCAGGAAATGAAACTGATTTGCAAGCCTTACTTGACTTCAAGAGTAGGATAGTAGAAGATCCATTCAAAATTATGAGCTCTTGGAATGACTCCATCCATCACTGCAGTTGGATAGGAATCACATGCAACATCTCCAATGGAAGGATCATGGACCTTAGCCTTGAGCAACTGAGACTAGGAGGCCCTCTTACACCATTCATAGGAAACCTCACATTCCTCAACAGACTCAACTTGCTAAACAATAGCTTCCATGGTGAATTTCCTCATGAGGTGGGTCGTTTACTCTACCTGCAACATCTAAACTTCAGCTATAATAACTTTGGTGGGAGTATTCCAAGTAATCTCAGTCACTGCATAAAACTGAAAGTACTAGCTGCAGGAGCTAACAATCTTACAGGAACAATCCCAACTTGGATTGGAAACCTTTCTTCTTTGTCTCGAATTAGCTTTGGGTTAAACAACTTCATTGGAAGCATACCACACGAGATAGGCCTTTTATCAAGCTTGACATATCTGGTGCTATATGGGAATTACTTGTCTGGCTCAGTTCCTTCTTCAATCTATAACAAATCTTCATTATACTATTTCAGTTTTACTCAAAACCATCTTCATGGGAACTTACCAGCTGATGTTGGAATTACTCTTCCTAACATTCAAGTATTTGCTGGGGCGGTCAACAATCTCACAGGATCTGTCCCTGCATCATTGTTGAATGCATCAAAACTAGAGATTCTTGATTTCTCCTTGAATGGTCTCACTGGAGCACTGCCAAAGAACTTAGGGGTCTTGAACAGGTTAACTAGACTTAGCTTTGAACACAACAGACTGGGAACTGGGAAAACAGATGATGTTAGCTTTCTTGATTCTTTGGTCAACTGCACAGTTCTACAAGTTTTACGTCTAGGAGTAAATAATTTTGGTGGAGTATTGCCTAAAGCAATTGCTAATTTCTCAAGCCAAATGCACACATTTGCCCTTAATTCCAATGGAATACATGGAAATATACCTGTTGGAATTGGCAATCTTGCTAACCTGGCCCTCATAGGTTTGGAAGGAAACCGTCTAACTGGTAGTCTTCCTGATGCATTGGGTAGGTTGAAAAATCTGAGAGAATTGTATCTGAACGTCAACAAATTTTCAGGTAGAATCCCATCCTCCTTGGGAAATTTGTCTGTATTAATAAAACTCTTTCTGGAGGAGAACAACTTCGAGGGAAGTATCCCTTCTACTCTTGGAAACTGCCAAAATTTATTGGTACTCAGCCTTTATAGCAACAAACTCAGTGGCACCATACCAGCCGAAGTTATTGGCCTTTCTAAACTAGCAATATATTTAGATGTATCTCATAATGCTTTGTCAGGGACTCTTCCAGCTGAAGTGAGTAAGCTACATAACCTTGGAGAGTTGGTGCTGTCTGAGAACAACTTTTCTGGAGTCATTCCATCTTCTCTTGGCAGTTGCATTAGCTTGGAAAAGCTGCATTTGGAGGGAAATTCTTTTGATGGAAACATCCCTCAAACTTTAAAGAATCTGAGAGGTTTACTTGATATAGATCTTTCACGAAATAACTTGTCTGGTAAGATTCCTGAGTTTCTTGGGGAGTTCACTGAGCTCAAGCATCTAAATCTTTCATACAATAATTTTGAAGGTGAAATACCGAAGAACGGAATATTCAAAAATGCTACTTCCCTTTCATTATATGGCAACAGCAAGCTATGTGGGGGTGTCCCAGAACTAAATTTCCCTGCATGCACTGTCAGGAAAGCTTCTCTGGCAAGAAGAATTCTTGCTCTTAAGGTGGCTATCCCTATAGCTTGTGCGCTTGTATTACTATTAATTCTATCATGTTTTCTTAAACTGCTCCCCATAGTTAAAAGATCAAAAAAGAAAACTCCTACATCAACTACTGAAAGGGATTTGGAATTGAAAATTTCTTACTCAGAAATTACCAAGTGCACTGATGGATTTTCACAGGATAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATACAAAGGAACTCTATCAGGTGATGAATCTAGTGTTGCAGTTAAAGTATTAAACCTTCAACAGAGAGGAGCATCTAAGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGCATAAGGCATCGCAACCTTCTGAAGATCATAACTGCCATATCAGGAGTTGATCATCAAGGCAATGACTTCAAAGCTCTAGTGTTTGAGTACATGCCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAGCAATTTTCACTTTCAGAATAAGACATTGACATTCACTGAAAGACTCAACATAGCTATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTGCTTCTTGACAATGATATGGTTGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAAGTTATCCACACGACCAGTTATGTCAGCTAGCCTAAGGGGTTCTATTGGCTACATCCCTCCAGAGTATGGTATGGGTGGGAAGCCCTCTATACTTGGAGATATATACAGCTATGGGATACTGTTACTGGAGATTTTCACAGGAAAAAGACCTACAGATGAAGCATTTGAAGGTAGCACGGGAATTCAGCAGTTTGTAGCGATGGCTCTACCAAACAATGTCAAGGATATAGCTGATCCTTCATTAGTCTCTGAACAAGACTTTGAAGGGGAAAGTGAACAATTTGAGTGCGAAACGAAAGCTATAAGGAGGAACAATGAGATTAAAGCCATGGCTAAAGGTTTGATTGAGGATTGCTTTGTGTCTCTGATGCAAATTGGAATGTCTTGCTCAGCAAATCCACCTAGTGAACGAATGCCAATCACCGTGGTCATCAACAAACTACACACTATCAAGAACATTTATACAGATAAAGCATAG 3051 0.3989 MNHPCANSRGLLSQILNRCLLVCMILIKESAIAATPAGNETDLQALLDFKSRIVEDPFKIMSSWNDSIHHCSWIGITCNISNGRIMDLSLEQLRLGGPLTPFIGNLTFLNRLNLLNNSFHGEFPHEVGRLLYLQHLNFSYNNFGGSIPSNLSHCIKLKVLAAGANNLTGTIPTWIGNLSSLSRISFGLNNFIGSIPHEIGLLSSLTYLVLYGNYLSGSVPSSIYNKSSLYYFSFTQNHLHGNLPADVGITLPNIQVFAGAVNNLTGSVPASLLNASKLEILDFSLNGLTGALPKNLGVLNRLTRLSFEHNRLGTGKTDDVSFLDSLVNCTVLQVLRLGVNNFGGVLPKAIANFSSQMHTFALNSNGIHGNIPVGIGNLANLALIGLEGNRLTGSLPDALGRLKNLRELYLNVNKFSGRIPSSLGNLSVLIKLFLEENNFEGSIPSTLGNCQNLLVLSLYSNKLSGTIPAEVIGLSKLAIYLDVSHNALSGTLPAEVSKLHNLGELVLSENNFSGVIPSSLGSCISLEKLHLEGNSFDGNIPQTLKNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSLSLYGNSKLCGGVPELNFPACTVRKASLARRILALKVAIPIACALVLLLILSCFLKLLPIVKRSKKKTPTSTTERDLELKISYSEITKCTDGFSQDNLIGSGSFGSVYKGTLSGDESSVAVKVLNLQQRGASKSFIDECQVLRSIRHRNLLKIITAISGVDHQGNDFKALVFEYMPNGSLEDWLHPISNFHFQNKTLTFTERLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSKLSTRPVMSASLRGSIGYIPPEYGMGGKPSILGDIYSYGILLLEIFTGKRPTDEAFEGSTGIQQFVAMALPNNVKDIADPSLVSEQDFEGESEQFECETKAIRRNNEIKAMAKGLIEDCFVSLMQIGMSCSANPPSERMPITVVINKLHTIKNIYTDKA 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02193 1016 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Phco3g02193 1016 SUPERFAMILY RNI-like 87 416 - -
Phco3g02193 1016 SMART LRR_typ_2 571 596 IPR003591 -
Phco3g02193 1016 SMART LRR_typ_2 202 226 IPR003591 -
Phco3g02193 1016 SMART LRR_typ_2 499 523 IPR003591 -
Phco3g02193 1016 SMART LRR_typ_2 130 154 IPR003591 -
Phco3g02193 1016 SMART LRR_typ_2 402 426 IPR003591 -
Phco3g02193 1016 SMART LRR_typ_2 378 401 IPR003591 -
Phco3g02193 1016 FunFam Leucine-rich repeat receptor-like protein kinase 39 196 - -
Phco3g02193 1016 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Phco3g02193 1016 Gene3D Ribonuclease Inhibitor 155 248 IPR032675 -
Phco3g02193 1016 SUPERFAMILY L domain-like 358 610 - -
Phco3g02193 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 774 1016 - -
Phco3g02193 1016 SMART serkin_6 692 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02193 1016 SUPERFAMILY Protein kinase-like (PK-like) 666 1005 IPR011009 -
Phco3g02193 1016 Pfam Protein kinase domain 693 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02193 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 318 626 - -
Phco3g02193 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 292 - -
Phco3g02193 1016 Gene3D Ribonuclease Inhibitor 41 154 IPR032675 -
Phco3g02193 1016 Gene3D Ribonuclease Inhibitor 249 318 IPR032675 -
Phco3g02193 1016 Pfam Leucine Rich Repeat 404 426 IPR001611 GO:0005515
Phco3g02193 1016 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Phco3g02193 1016 ProSiteProfiles Protein kinase domain profile. 692 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02193 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Phco3g02193 1016 Gene3D Ribonuclease Inhibitor 319 620 IPR032675 -
Phco3g02193 1016 Gene3D Phosphorylase Kinase; domain 1 672 773 - -
Phco3g02193 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 773 - -
Phco3g02193 1016 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Phco3g02193 1016 PANTHER OS04G0122200 PROTEIN 44 1009 - -
Phco3g02193 1016 Gene3D Transferase(Phosphotransferase) domain 1 774 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02193 Phco-Chr3 48149746 48152878 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco3g02193 Pkinase 7e-41 CL0016