Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02183 ATGGTGTTCTTATTTCCAACGTTTCAGTTCATGAAGCTCCTGCTTCTACTTGTAATGGCCAATTCTCTCCATGCAACATTGTCTTCCTCACTCTCATTTCAACACACAGAAGCAAATGCTCTCTTGAAGTGGAAAGCAAGCCTTGACAAACAAAGTCAAACATTACTATCTTCATGGGATGGCAATACTTCTTGTAATTGGCTTGGAATTTCTTGTGAATACTCAGGATCGGTCTCCAACATAAATCTTACAAACATTGGATTAAGTGGTACGCTTCAAACTCTCAATTTTTCATCACTTCCAAACATCCTCACTCTAGATATGAGTCTTAACTCCTTGAGTGGAAGTATTCCTCCTCAAATCGGGGTGTTATCTAAACTCACTCATCTTGATTTAAGTCACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCACTTGGTCAGTCTTCACTTTTTACATTTGGAAAATAATGTTTTCAATGGTTCTATTCCTGAAGAAATAGGTGCATTAAGGAATTTGAGAGAGATTAAAATTGAAAATGCCAATCTCACAGGGACAATCCCAAATTCTATTGGAAAGCTATCATTCTTGTCAATACTTTCTTTATGGAATTGCAGTCTCACAGGATCTATTCCAAAGTCTGTTGGGAATTTGTCTAACCTACAGACTTTGACGCTTGGACATAATAACTTATATGGTTGTATTCCTAAAGAAATAGGTAAGTTGCAGAACCTAAGAATTCTATATATACCTGCAAACAATTTATCTGGCAATATTCCCGTGGAAATTGGAAAGTTGGTCAACTTGATCCAGCTATGGCTTTTCGATAATACTCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATGACAAATATGTTTCAACTTGATTTGTCGCGAAACTTTTTGTCAGGCACAATCCCTCCTACAGTTGGAAATTTGAGCAATTTATTCTATTTGTACATGTATTACAACCATCTAACTGGATCCATTCCTAATGAAGTGGGAAAACTTCATTCTCTTCTCACGCTCCAATTGTCAAGCAATAATCTTTCTGGGCCAATCCCATCTTCCATTAGTAACTTGGTCAATTTGGAATCTATTGTGATTCATCAAAACAAACTTTCTGGAACAATTCCTTCGACTATTGGTAATTTGACAAAGCTCACCATACTTGAGTTGAACTTTAATTCTTTGTCAGGTACAATCCCACATTCCATCGGTAACTTGGTCAATTTGGAATCTATTTTCCTTAGCAAAAATAACCTCTCTGGAAAAATTCCTTTGACGATTGGTAAATTGACAAAGCTCATCAATATTGCTTTGAATGAGAACTCTTTGTCAGGTATAATCCCCCCTACAATTGGAAATCTGAGCAATTTAGTCTATTTCGAGATTAATGACAACCATCTATCCGGAACAATTCCTTCGACTATTGGTAATTTGACAAAGCTCACCATACTTGAGTTGAACTTTAATTCTTTGTCAGGTACAATCCCACATTCCATCGGTAACTTGGTCAATTTGGAATCTATTTTCCTTAGCAAAAATAACCTCTCTGGAAAAATTCCTTTGACGATTGGTAAATTGACAAAGCTCATCAATATTGCTTTGAATGAGAACTCTTTGTCAGGTATAATCCCCCCTACAATTGGAAATCTGAGCAATTTAGTCTATTTCGAGATTAATGACAACCATCTATCCGGAACAATTCCTTCGACTATTGGTAATTTGACAAAGCTCACCGAACTTAATTTATTGTCAAATAAGCTTGGTGGGCACATTCCAATAGAAATGAATATGCTACACAACTTGGAAAATCTGCAATTATATGACAATAATTTCATTGGTCATTTGCCTAACAACATTTGCTTTAGTGGAAAGTTGATAAATTTTAGTGCTAGCAATAACTATTTCACAGGTCCAGTACCTAAGAGTTTGAAGAATTGTTCCAGTCTCATAAGAGTTTCGCTTCAAAAAAACCATTTAACAGGAAATATAACGGAGGATTTCGGTGTATACCCAAACTTGGATTACATAGACCTGAGTGAATACAACTTTTATGGCCATCTTTCCTCACAATGGGGAAAATGTCATAATCTCACATGCCTCAAAATCTCCAACAACAATTTATCAGGAAGCATTCCACCAGAACTAAGTCAGGCAACCAAGTTACATGTACTTCAATTGTCTTCAAATCACCTCACAGGAGACATTCCTGAACGTTTAGGTAATTTGACCTACTTGTTCGAACTCTCTCTCAATAGTAATAATCTTTCGGGGAATGTTCCTATACAAATAGCATCATTGCAAAGTCTTGAGACCTTAGAACTCGGAGCAAATAGTTTTTCTGGCTTAATTCCAAATCAACTTGGTAATTTGGTCAAGTTATTACATTTGAATTTGAGCCAAAATAAGTTTAAGGAAAATATTCCATCTGAGTTTGGTAAATTAACATATCTTCAAAGTCTTGATCTTAGCATGAATGTTTTGAGTGGAAAAATACCATCAATGCTGGAAGAGTTGAGAAGCTTAGAAATATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCGAGCCTTTATGGGATGATAAGCTTGACATCTGTTGATATATCATACAATCAATTAGAGGGTCCACTTCCAAACATTTCAGCCTTCCAGATGGCTACCATCGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTTTCAAGCCTAGAACCATGCCCAACATCACGTGACCAATCTCAAAATCATAAGACTAACAAAGTCCTATTGGTTTTTCTAGCCACTGGTTTGGGCACTTCCATGCTAGCATTATTTTTCTTTGGAGTCTCATATTATCTTTGTAGAAGGTTAGAGACAAAAGGACACCCGGATGCAGAATCATCATGTCAAGATCTTTTTGCAATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAGAGTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAATTGCAAACAAGTCAAATTGTTGCTATTAAGAAACTCCATTCAGTACAAAATGGAGAAATGTCGTCCAATGTTAAAGCTTTCAAAAATGAAATTCAAGCTTTGACAAAGATTCGACATCGTAACATTGTGAGGCTATATGGGTTTTGTTCTCATTCCCAATTCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGGAGCATAGATAAGATTTTAAAAGACGATGAAGAGGCAATTGCATTTGATTGGAATAGGAGGATTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATGCATCACAATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACCAATTGGACCTTATTTGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACGATGGAAGTGAATGAAAAATGTGATGTGTATAGCTTTGGGGTATTGGCATTGGAAATACTTTTGGGAGAGCACCCTGGAGATTTTATAAATTCATTGTTGGCATCTTCATCAGAAGTACAAAACTTAACTTTTGATATTCCTTCATTGATGGGTAAGTTAGATAAACGTCTCCCATATCCTACCAATATTGCTAAGGAGATAGTTTTGATTGTAAGGATATTAAATGCTTGCTTGACTCAAAGCCCTAGTTCTCGTCCTACCATGGAGCAAGTTGTCAACTACTCCTCAATGTAG 3813 0.3635 MVFLFPTFQFMKLLLLLVMANSLHATLSSSLSFQHTEANALLKWKASLDKQSQTLLSSWDGNTSCNWLGISCEYSGSVSNINLTNIGLSGTLQTLNFSSLPNILTLDMSLNSLSGSIPPQIGVLSKLTHLDLSHNHLTGPIPSEITHLVSLHFLHLENNVFNGSIPEEIGALRNLREIKIENANLTGTIPNSIGKLSFLSILSLWNCSLTGSIPKSVGNLSNLQTLTLGHNNLYGCIPKEIGKLQNLRILYIPANNLSGNIPVEIGKLVNLIQLWLFDNTLSGSIPQEIGMMTNMFQLDLSRNFLSGTIPPTVGNLSNLFYLYMYYNHLTGSIPNEVGKLHSLLTLQLSSNNLSGPIPSSISNLVNLESIVIHQNKLSGTIPSTIGNLTKLTILELNFNSLSGTIPHSIGNLVNLESIFLSKNNLSGKIPLTIGKLTKLINIALNENSLSGIIPPTIGNLSNLVYFEINDNHLSGTIPSTIGNLTKLTILELNFNSLSGTIPHSIGNLVNLESIFLSKNNLSGKIPLTIGKLTKLINIALNENSLSGIIPPTIGNLSNLVYFEINDNHLSGTIPSTIGNLTKLTELNLLSNKLGGHIPIEMNMLHNLENLQLYDNNFIGHLPNNICFSGKLINFSASNNYFTGPVPKSLKNCSSLIRVSLQKNHLTGNITEDFGVYPNLDYIDLSEYNFYGHLSSQWGKCHNLTCLKISNNNLSGSIPPELSQATKLHVLQLSSNHLTGDIPERLGNLTYLFELSLNSNNLSGNVPIQIASLQSLETLELGANSFSGLIPNQLGNLVKLLHLNLSQNKFKENIPSEFGKLTYLQSLDLSMNVLSGKIPSMLEELRSLEILNLSHNHLSGDLSSLYGMISLTSVDISYNQLEGPLPNISAFQMATIEALRNNKGLCGNVSSLEPCPTSRDQSQNHKTNKVLLVFLATGLGTSMLALFFFGVSYYLCRRLETKGHPDAESSCQDLFAIWSFDGKMVYENIIEATEEFDNKHLIGVGGQGSVYKAELQTSQIVAIKKLHSVQNGEMSSNVKAFKNEIQALTKIRHRNIVRLYGFCSHSQFSFLVYEFLEKGSIDKILKDDEEAIAFDWNRRIDAIKGVANALCYMHHNCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTLFVGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILLGEHPGDFINSLLASSSEVQNLTFDIPSLMGKLDKRLPYPTNIAKEIVLIVRILNACLTQSPSSRPTMEQVVNYSSM 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02183 1270 ProSiteProfiles Protein kinase domain profile. 995 1270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02183 1270 FunFam Uncharacterized protein 629 923 - -
Phco3g02183 1270 Gene3D Ribonuclease Inhibitor 603 923 IPR032675 -
Phco3g02183 1270 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 375 628 - -
Phco3g02183 1270 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Phco3g02183 1270 FunFam Leucine-rich repeat receptor protein kinase EMS1 287 374 - -
Phco3g02183 1270 FunFam Nuclear pore complex protein NUP107 34 190 - -
Phco3g02183 1270 Gene3D Phosphorylase Kinase; domain 1 964 1074 - -
Phco3g02183 1270 SUPERFAMILY RNI-like 80 402 - -
Phco3g02183 1270 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 535 1266 - -
Phco3g02183 1270 SUPERFAMILY Protein kinase-like (PK-like) 978 1267 IPR011009 -
Phco3g02183 1270 FunFam MDIS1-interacting receptor like kinase 2 1075 1270 - -
Phco3g02183 1270 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515
Phco3g02183 1270 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 286 - -
Phco3g02183 1270 Pfam Protein kinase domain 996 1267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02183 1270 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Phco3g02183 1270 PRINTS Leucine-rich repeat signature 844 857 - -
Phco3g02183 1270 PRINTS Leucine-rich repeat signature 823 836 - -
Phco3g02183 1270 Gene3D Ribonuclease Inhibitor 197 269 IPR032675 -
Phco3g02183 1270 SUPERFAMILY L domain-like 651 906 - -
Phco3g02183 1270 Gene3D Ribonuclease Inhibitor 270 437 IPR032675 -
Phco3g02183 1270 Gene3D Ribonuclease Inhibitor 438 602 IPR032675 -
Phco3g02183 1270 FunFam Leucine-rich repeat receptor protein kinase MSP1 958 1074 - -
Phco3g02183 1270 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1120 1132 IPR008266 GO:0004672|GO:0006468
Phco3g02183 1270 SMART LRR_sd22_2 388 403 - -
Phco3g02183 1270 SMART LRR_sd22_2 412 444 - -
Phco3g02183 1270 SMART LRR_sd22_2 124 147 - -
Phco3g02183 1270 SMART LRR_sd22_2 556 582 - -
Phco3g02183 1270 SMART LRR_sd22_2 340 366 - -
Phco3g02183 1270 SMART LRR_sd22_2 460 486 - -
Phco3g02183 1270 SMART LRR_sd22_2 508 540 - -
Phco3g02183 1270 SMART LRR_sd22_2 244 263 - -
Phco3g02183 1270 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Phco3g02183 1270 SMART LRR_typ_2 844 867 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 772 795 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 124 147 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 292 316 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 556 580 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 484 508 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 340 364 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 148 172 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 604 628 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 220 244 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 796 820 IPR003591 -
Phco3g02183 1270 SMART LRR_typ_2 388 412 IPR003591 -
Phco3g02183 1270 SUPERFAMILY L domain-like 298 730 - -
Phco3g02183 1270 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Phco3g02183 1270 Pfam Leucine rich repeat 461 521 IPR001611 GO:0005515
Phco3g02183 1270 Pfam Leucine rich repeat 199 257 IPR001611 GO:0005515
Phco3g02183 1270 Pfam Leucine rich repeat 817 857 IPR001611 GO:0005515
Phco3g02183 1270 Gene3D Transferase(Phosphotransferase) domain 1 1075 1270 - -
Phco3g02183 1270 ProSiteProfiles Leucine-rich repeat profile. 846 868 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02183 Phco-Chr3 48052424 48056384 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g02183 Pkinase 1.9e-48 CL0016