Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02179 ATGCATAGGGCAATTGAAGCACTGTCTCCAGCCTCCTATCTCCAAAATTCAAACTGGTTGTTCCAGGAAAGCAAGGGAGGAGGATGGACTGCAGAAGAAAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGATACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCCAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATTCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAGTCAAAGCTATGACGAATTCAAGCAGTTTTGTAGTGTTGGAGGGAAAAGGGGCGCGTCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCTACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCCTCAGGCAGCTTACAGGAGGGAAGGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCACTACAGAATCAGAAACTGTGTAGCATGGTTAAGCAGGAATATGATTGGAAATTGCCATGTAATGACATGCCTTTTGTTTTCAATTCAACAAATGGAAATATGTTCATGGCAGCACCACTGCATGGGATTTCTTCATATGAATCTAGACCACAGGAGCTTAATATACTTAGACAATCTCCATGGACGCCAGTTTTCACCTTGTGA 861 0.446 MHRAIEALSPASYLQNSNWLFQESKGGGWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNSQSYDEFKQFCSVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFLRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLCSMVKQEYDWKLPCNDMPFVFNSTNGNMFMAAPLHGISSYESRPQELNILRQSPWTPVFTL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02179 286 Gene3D - 134 184 - -
Phco3g02179 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 242 IPR043363 -
Phco3g02179 286 MobiDBLite consensus disorder prediction 117 136 - -
Phco3g02179 286 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Phco3g02179 286 Gene3D - 21 88 - -
Phco3g02179 286 SMART sant 25 77 IPR001005 -
Phco3g02179 286 SMART sant 132 182 IPR001005 -
Phco3g02179 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Phco3g02179 286 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Phco3g02179 286 CDD SANT 135 180 IPR001005 -
Phco3g02179 286 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Phco3g02179 286 FunFam Transcription factor SRM1 21 88 - -
Phco3g02179 286 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Phco3g02179 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Phco3g02179 286 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Phco3g02179 286 FunFam transcription factor MYB1R1 134 185 - -
Phco3g02179 286 CDD SANT 29 74 IPR001005 -
Phco3g02179 286 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02179 Phco-Chr3 47959926 47961306 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02179 Myb_DNA-binding 3.7e-12 CL0123