Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02118 ATGAACACTATTATCCGCCACCGGCTATGGCTAATTCCAACACCTCTTCTCTATTCCTTCCCCAAATCCCCTTTTCTGCAATCCTCTCTCTTCTTCTCGACAACCACTTCTGATTCCATCTCCTTCACTGTATCCTACCTCACCAACACTTGTGGCTTCTCTCCCGAGGCCGCACTAAAACTATCCAAACGACTTCGTTTCAACAGTGCCCACAAAACCGATTCCGTCATCTCCTTCTTCCGAACCCACGGTTTCTCCGTCCCCCAGATCCACCAGATCTTCAGCAAAGCCCCCGATGTCATGCTATGCGATCCCACCCGAAGGATTCTCCCCAAATTCCACTTCTTGGCCTCCAAAGGCGCTTCTCCCTCCGACACCGTTCTCGTCGTCACTAAGAACCCCCGTTTCCTCCTTCACAGCCTCAACAACCACATCTCTCCCATCTTCCAACTGCTCCGAACGTTCTTTCCCTCCGACCTCAAAGCCCTTGCTATTCTCATAGCCTTTCCCTATATCATCGGCGACAATCGCGTCGCGTCCAACGTTGAAATGTTGCTGAAAGCCGGAGTCTCGAACTCCGGCATTCGGCACTTGCTCTGCTCTCGGTCGTTGGTTCTCTGCTCCAACCTGAGAACCGTCTTGGATGAAGTGAAGCTGTTGGGCTTTGACCCTTTGAAGCTGTCCTTCGCTGTGGCCATTGTGGCCAAGCGGACTGTTTGGAAATCCCTTTGGGATGCCAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCTGAGGATGAAGTTATGGTTGCGTTTAGGAAACAGCCTACAATGATGCTCTGCTCCAAGGAGAAACTTAATGCAGTGACGGGGTTTTGGGTGGGTCGGCTCGGATGGGATCGTTCCACGCTTATTGCTTACCCATCGATGTTTTTGTACAGTTTGGAGAAAAGGGTTGTTCCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAGAGGATTGGTGAAGAAGGATGCTAGCTTGGTCACACCGTTTGGTAGGTCTGACGAGGTGTTTCTGCAAAAGTATGTGAGACGTTTCAAGGAGGAAACGCCCAGGTTACTTGAGCTATATCAGGAGGGACAGGGAACATGCTAA 1116 0.509 MNTIIRHRLWLIPTPLLYSFPKSPFLQSSLFFSTTTSDSISFTVSYLTNTCGFSPEAALKLSKRLRFNSAHKTDSVISFFRTHGFSVPQIHQIFSKAPDVMLCDPTRRILPKFHFLASKGASPSDTVLVVTKNPRFLLHSLNNHISPIFQLLRTFFPSDLKALAILIAFPYIIGDNRVASNVEMLLKAGVSNSGIRHLLCSRSLVLCSNLRTVLDEVKLLGFDPLKLSFAVAIVAKRTVWKSLWDAKVDALKKWGWSEDEVMVAFRKQPTMMLCSKEKLNAVTGFWVGRLGWDRSTLIAYPSMFLYSLEKRVVPRALVVQYLLSRGLVKKDASLVTPFGRSDEVFLQKYVRRFKEETPRLLELYQEGQGTC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02118 371 Gene3D Transcription termination factor 3, mitochondrial 165 359 IPR038538 -
Phco3g02118 371 Pfam mTERF 246 346 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 Pfam mTERF 77 211 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 PANTHER CGI-12 PROTEIN-RELATED 39 354 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 127 157 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Phco3g02118 371 FunFam Mitochondrial transcription termination factor-like 141 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02118 Phco-Chr3 47039936 47041051 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco3g02118 mTERF 5.1e-17 No_clan