Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02115 ATGGGTGGTGTTGCTTGGACAGAAGAAGAAGATCACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTGCTAGCTGGTTTAAACAGGTGCCGAAAGAGTTGTAGGCTAAGATGGCTGAACTATCTCCGTCCAAATATCAAGAGGGGAAATTTTGCGGAGGAAGAAGTGGAGATGATAATCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTGATTGCAGGAAGGCTACCAGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGCAAAAGACTAAATGCTCTAGAAGCTGAAGATAAACCTGTAAGCAGAGATGTTCAAGTGATTAGGCCTCAGGCTAGGAATATTGGTTCAAGCTCAGTGAAAAGAAGGGGTGAGGGAGAGTCTCCAACAGAGAAAGCAGTTCAACAAGAGAGCAGCATGTCCTCACTGACATTTGATGCTGATGGACATAATCAAGTGGTTGAATCACAGGAAGACAACATATATGCATGTTTGGACCAACAAGGCATTGTTAATGAATTGTCAATGGACTTTCAATTAGAAGGATTTGAAGAAATTATGAATGGGGAGGGGAGTGGCAGCCAATGGGATTGGGGTGATTTGCTTCTTGACATGGATTTGTATAAGTGA 672 0.4226 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKRLNALEAEDKPVSRDVQVIRPQARNIGSSSVKRRGEGESPTEKAVQQESSMSSLTFDADGHNQVVESQEDNIYACLDQQGIVNELSMDFQLEGFEEIMNGEGSGSQWDWGDLLLDMDLYK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02115 223 SMART sant 2 52 IPR001005 -
Phco3g02115 223 SMART sant 55 103 IPR001005 -
Phco3g02115 223 FunFam Myb transcription factor 3 55 - -
Phco3g02115 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Phco3g02115 223 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Phco3g02115 223 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Phco3g02115 223 MobiDBLite consensus disorder prediction 130 152 - -
Phco3g02115 223 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Phco3g02115 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 160 - -
Phco3g02115 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Phco3g02115 223 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Phco3g02115 223 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Phco3g02115 223 CDD SANT 58 101 IPR001005 -
Phco3g02115 223 Gene3D - 4 55 - -
Phco3g02115 223 Gene3D - 58 127 - -
Phco3g02115 223 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02115 Phco-Chr3 47015774 47017330 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02115 Myb_DNA-binding 9.1e-16 CL0123