Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02102 ATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGGAGGGACAAGTTAAGAGTTTTCGCTCAGAACCAACCTTCTTTCGTTGAATCTTCCACTATCCTTCATCCCACTTGTCCAACTTTAACCTCTCTCTACGATCCTTCTCTTATTCCTTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGCGGCTGCTAAGGGAGAAGGTTCCAATTTGATGATGGGGTTTGTGGAAGGGGGGGTTGTCAATGGTGATGCAATTCATGTTATCAACAGTAATAGCAACCACCACAACAACAACCCTTTTCTCTATCAGCTTCAGAACCTTAGGGAATTTGGTGATGGCTACAATGATGCCAGTGAAATGATGGTGTTCAAGCCTGAGCCTTTGTCTTTGTCTTTGTCTTCCCAGACTAACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATTTGGGGCTGTTATTCCAGGTTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAACCTGCACAGCAATTATTGGAAGAGTTATGCGATGGCGGGGTTCGTGGAATTTACGCTACCGAGAAGTCTCTTGCTCCTGATGAGTCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCTAGTGGAGTTGTTGGTGGGGATGATCCACTTGGGGAATACGAGAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATTCAGTGATAACTTCATTTGAGTATGTTTCTGGTCTTGGTAATGCAGCCCCATTTGCAAGTTTGGCTATAAATGCAATGTCCAAACATTTTAAATGCTTGAAGAGTGCTATCACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAGTAACAGAAAGGATGAATCTCCAAGGTTGCACAGCAGTGAAAGGGGCACTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACAACCAGTTTGGCGACCTCAAAGAGGACTTCCTGAGCGTGCTGTCAGTGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTTCACCCTTATCCTACTGATACCGACAAGCTTATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAGATACATATGCTAGAATCACAGCAAGCTCAAAAAAGGCCACAGAGGGAAGAACAAAGTAGGAGAAACTTAAGTGTTGATCATTTACCTTCAGACAACTCTCTTGTTACTGAGAATCCATCTACCTCCATGGAGAAGTTTCAGGATACCCCTTATAAACAACACAGAAATGAAATTGCTAAAATGCAAATGAGGGGTCAGGAACAGCTGAATCAAACTAACACGAACAATCAGCAAGTGGGTGTTGGAGTGAGCATGGGGACTGGTGGTGGTGGGGCAAGCAGTAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGGTTGTCTGAGCCCTTTGGCATGAGTGCAGCTCAACGTTTTGGTGTCACCCTTCAACCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1752 0.4429 MAEGFEHYHVPQQSRRDKLRVFAQNQPSFVESSTILHPTCPTLTSLYDPSLIPSDLLACATQQGAAAKGEGSNLMMGFVEGGVVNGDAIHVINSNSNHHNNNPFLYQLQNLREFGDGYNDASEMMVFKPEPLSLSLSSQTNNTHHPLELNLQRFGAVIPGLVGRNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEELCDGGVRGIYATEKSLAPDESLMEPPHEGLSASGVVGGDDPLGEYENESRKKKCRLLTMLDEVYRRYRQYYQQMHSVITSFEYVSGLGNAAPFASLAINAMSKHFKCLKSAITDQLQFINKAPFQISNRKDESPRLHSSERGTYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKRPQREEQSRRNLSVDHLPSDNSLVTENPSTSMEKFQDTPYKQHRNEIAKMQMRGQEQLNQTNTNNQQVGVGVSMGTGGGGASSNNGVSLTLGLHQNHGIGLSEPFGMSAAQRFGVTLQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02102 583 CDD homeodomain 358 419 IPR001356 GO:0003677
Phco3g02102 583 Pfam Associated with HOX 184 313 IPR006563 -
Phco3g02102 583 SUPERFAMILY Homeodomain-like 360 425 IPR009057 -
Phco3g02102 583 FunFam BEL1-like homeodomain protein 9 361 423 - -
Phco3g02102 583 MobiDBLite consensus disorder prediction 427 473 - -
Phco3g02102 583 Gene3D - 361 423 - -
Phco3g02102 583 MobiDBLite consensus disorder prediction 427 446 - -
Phco3g02102 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 433 - -
Phco3g02102 583 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Phco3g02102 583 SMART prehox3 179 314 IPR006563 -
Phco3g02102 583 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Phco3g02102 583 SMART HOX_1 358 422 IPR001356 GO:0003677
Phco3g02102 583 MobiDBLite consensus disorder prediction 493 514 - -
Phco3g02102 583 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02102 Phco-Chr3 46846755 46851924 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco3g02102 POX 2.6e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02102 3 46846755 46851924 Phco3g02102 3 46846755 46851924 ECH