Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02087 ATGGTTCCATTAAGCACTTTCATGGACCAACCTACCATCATTGCGATGCTAATATTCACAACTATGGCATTGTTACTATCACGCGCCGACGCCATGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACGGGACCCGATTGTGGCGACCCGTCGTATAAGATCCGGTGCACCGCGGGTACACTCTGGTTCGACGCACTCGCCGGATCATCCTACGCGATCAAGTCTATTGACCCGTCCACCCGTCGGATCATAACCCGACCCGCCATGCTGGCTCCAAAAACGTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTGGCTTCGGGGAACGCCGTTTTTCTCTTCAACTGCACCGCCCACGCGCCTTCGATGAACTGCTCCGCAAGCAGCGCGTGCCACAGCTATATTAAGGAGCACGCAGATATCGGCGCATGCGGCAGCGCAGGCTCGTGCTGCGAGTACCGGAGCGGTGGGGCCCGTAAAGAGTTCGCGATTCGCTTGCACGGCGGGGAGTGCGCGGCGTATACGAGTTTTGTGGATTTAAACGGCACGGCGGCGAGTGTGGGGAAGCGGTGGCCGGAGAGTGGGGTGGGGATCGAGTGGGTGGCTCCACTGGAACCGGTCTGTAAGGAGACTATAGATTGCAAGGAGTTGTTGAACTCAAAATGTGGAGTGGGCCCCAGTGGTGGGGTGCACAGGTGCTTCTGCAATGCTGGGTTTGCGTGGGACCCCATCAATGGTTTGTGTCAACCACAAACTCAGACACACAACACAAAGTGCACAGTACATGGAAAAGATAGCCCCTGCAAATTTCGGAAGAAGAAGAAGAAGAAGATGCTTTTGGCTGTGGTTGTTTCCTTAGGAGGAATAGTCTTTGTTGTAACTGTCATAGGAGTCATTTTCTACAAGAAGCATAACCAAGCAAAAGGAAAAGCAAAGGAGGCTAAAATCAGTAAGAGAAATGAAGTCTCAAGTGCCAAAGCCAGTGCTTTATCTTCCAGAATCTTCACTGGAAGAGAGATAAAAAAGGCAACCAACAATTTCTCCCGAGAAAACCTCATTGGCACTGGTGGCTTCGGTGAAGTCTTCAAGGGGACATTCGATGATGGAACCGTCTTTGCCATCAAGCGAGCCAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTAATATACGAGTTAGTATCAAATGGGACCCTTTTTGATTACCTTCACCGCCACTCTTGTAGCACAAGCGAACCCCTAAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCTGAAGGGCTTTCATATCTGCATTCTTCAGCTGTGCCACCCATTTACCACCGAGATGTGAAATCAAGCAATATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTTGTTGAGTTGGCTGAAGAAAACAAGAGCCATATCTTCACTAGTGCTCAAGGGACACTAGGGTACCTAGACCCTGAGTACTATCGTAACTTTCAGTTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTGGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCCATTGATTTCAACAGGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAGGAAAATGGTTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTTCTTAAAGAGGGAGCTAGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGACCAGAGGCAAAAACGGCCTTCGATGAAAGAAGTTGCTGATGAGATTGAATACCTGATTAAAGTTATTAAAGGGCAAGTTTCCAAATTATGA 1968 0.4883 MVPLSTFMDQPTIIAMLIFTTMALLLSRADAMRKCGNCGPNPVPYPLSTGPDCGDPSYKIRCTAGTLWFDALAGSSYAIKSIDPSTRRIITRPAMLAPKTCVSTDFRSEGMHLNETLPFSVASGNAVFLFNCTAHAPSMNCSASSACHSYIKEHADIGACGSAGSCCEYRSGGARKEFAIRLHGGECAAYTSFVDLNGTAASVGKRWPESGVGIEWVAPLEPVCKETIDCKELLNSKCGVGPSGGVHRCFCNAGFAWDPINGLCQPQTQTHNTKCTVHGKDSPCKFRKKKKKKMLLAVVVSLGGIVFVVTVIGVIFYKKHNQAKGKAKEAKISKRNEVSSAKASALSSRIFTGREIKKATNNFSRENLIGTGGFGEVFKGTFDDGTVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYELVSNGTLFDYLHRHSCSTSEPLKLHQRLKIAHQTAEGLSYLHSSAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEESVNLAMYGKRKMVEEKLMDVVDPFLKEGASDLELETMKSLGYLAVSCLDDQRQKRPSMKEVADEIEYLIKVIKGQVSKL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02087 655 SMART serkin_6 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02087 655 ProSiteProfiles Protein kinase domain profile. 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02087 655 SUPERFAMILY Protein kinase-like (PK-like) 338 640 IPR011009 -
Phco3g02087 655 Gene3D Transferase(Phosphotransferase) domain 1 439 652 - -
Phco3g02087 655 Gene3D Phosphorylase Kinase; domain 1 321 438 - -
Phco3g02087 655 Pfam Protein kinase domain 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02087 655 CDD STKc_IRAK 369 642 - -
Phco3g02087 655 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Phco3g02087 655 FunFam Wall-associated receptor kinase-like 20 325 438 - -
Phco3g02087 655 FunFam Wall-associated receptor kinase-like 20 439 654 - -
Phco3g02087 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Phco3g02087 655 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 644 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02087 Phco-Chr3 46658138 46660809 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Phco3g02087 Pkinase 4.8e-47 CL0016