Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02064 ATGGAGGAGGATCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGTTCTAGTCTTGATGATTCTTCTACTAATTACCCTTCCAATGAAGACCACTTATGGGAAGAGCAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGTGTGGCCACCACGATCATACTCTTGTACCTTTTGCACAAGAGAATTTAGGTCAGCACAGGCTTTAGGAGGCCATATGAATGTTCACAGAAGAGATAGAGCAAGACTAAAGCAGCCATATAGTCCTCAGAATGAAATCCTCAATGATGATCTTGAGAAAACTCAAACCCAGAATTCGGTTCAAATTTCTTTTACTTCATTGGGTTACTTATACCCACCTTCTCATAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCACCTTCCAATGTTTTAGGCACTTCACTTAACAAAAGATGCAGAGAGAAACCCCAGATTCCACTATACAATAATTCTTCAATTTTCAAAGGATGTCACGAGTCTTCCCCTTCTCTTTCTTCTAAATCCTGGTCAAATTTAACTGATGACTTCAGATTTTGTTCAAGTAGGCTCGATCTTGAAGCCAGTTTTGAGAAAAAATTGCAGGGATTGGATTCTGGGTGTAGGAGTGAGAGTGATAAGGGTAAAACTGAGGTGGCTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCTGTGCAGTTTGAAAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGACGCTTCATCCATTCCAATCTTCCCCAAATCATGTTCAGTTGATAAGCATCATGTGCAGTCAGAGATGTTTGATTTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCGAGGTATAG 918 0.4052 MEEDQCLIRSKRKYSMSSSLDDSSTNYPSNEDHLWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILNDDLEKTQTQNSVQISFTSLGYLYPPSHSGLAHNTNPNSDPYSHVVASPSNVLGTSLNKRCREKPQIPLYNNSSIFKGCHESSPSLSSKSWSNLTDDFRFCSSRLDLEASFEKKLQGLDSGCRSESDKGKTEVAVSMNLFMSRAHPVQFENKETDTSFKKRKSDASSIPIFPKSCSVDKHHVQSEMFDFSPSSIEELDLELRLGYRSEV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02064 305 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Phco3g02064 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Phco3g02064 305 PANTHER OS07G0101800 PROTEIN 29 302 - -
Phco3g02064 305 Gene3D Classic Zinc Finger 52 112 - -
Phco3g02064 305 Pfam C2H2-type zinc finger 56 80 - -
Phco3g02064 305 SMART c2h2final6 56 78 IPR013087 -
Phco3g02064 305 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02064 Phco-Chr3 46277198 46278115 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco3g02064 zf-C2H2_6 1.6e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02064 3 46277198 46278115 Phco3g02064 3 46277198 46278115 ECH
Phco3g02064 3 46277198 46278115 Phco3g00647 3 5243645 5252122 ECH