Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02056 ATGTTTCTCAAGCTTGTAGCGGTGGTGTTTGTGCTGGCAACAACAGTGGCTAGTGAAGATGCCGTCAGTTTCACCTATAAAGGGTTCCAGTCATCATCCCATATGTATCTTGATGGCGGCGCTGAGTTCAGCTCCGAGGGCATGCTTAAACTCACCAACCACACCAGGCAACAAAAGGGTCATGCTTTCTTCCCTAGTCCAATAGTCTTCAAGAACACCACAAATGGAAGTGTATCTTCTTTCTCCACCACGTTTGTGTTTGCCATAAGTTCTGAGTATCCAAATTTGAGTGGTCATGGAATTGTTTTTGTGGTTTCTCCAACAAAAGGGCTTCCAAATTCTCTGCCAAGCCAGTTCCTTGGCCTTTTTGATGACACCAACAATGGGAACTCCGGCAACCATGTTTTTGGGGTGGAGCTTGATACCATTCTGAATACTGAATTTGATGATATTAATGACAACCATGTCGGAATTGATGTCAACGGATTGAAGTCGGTTAAATCAGTTGCTGCAGGATATTACAGTGACGGGGGGTTTAAGAATTTGAGTCTCATCAGTGGCTACCCAATGCAGTTATGGGTGGAATATGATGGCCCAAAGAAGCAGATTGATGTTACTTTAGCTCCAATTAACATTGGCAAACCAGAAAGCCCCTTGTTATCTTTGAGCAAAGATCTTTCTCCAATTCTTAACAATAGTATGTATGTTGGATTCTCATCCTCAACTGGGTCAATTCAAAGTTATCATTATATTTTGGGTTGGAGCTTTAAGGTGAATGGGCAGGCTCAACAACTTGCCTTCTCTGAACTCCCCAAGCTACCTAGACGAGGCAGTAAAGAAGAGTCGAAGGTTCTTATTGTCGGGTTGCCTCTTATATCACTCAGTTTGGTTATCATGGTGGCTCTGGCCGTGGTTCATGTCATCAAAAGGAAGAAGTTCAAGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAAGTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAAATTGAGGTTGCAGTGAAGAAGGTGTCCCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATTGTTAGCATTGGCCGTCTTAGGCACAGGAATTTGGTTCCCCTTCTGGGGTACTGCAGGCGCAAGGGAGAGTTGCTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTATAACAAGCCAAGAGTGACCCTAAATTGGAGCCAAAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGCTTTATCTACATGAGGAATGGGAGCAAGTAGTGGTCCACAGAGACATTAAGGCTAGTAATGTGCTAATTGATTCCGAGTTGAATGGTAGATTAGGGGACTTTGGTCTTTCAAGGTTGTATGAGCATGGAACTGACCCTCACACTACTCATGTGGTTGGAACACTTGGGTATCTAGCACCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCAGATGTGTTTGCTTTTGGGGCATTTATGCTAGAGGTTGTTTGTGGAAGAAGGCCAATAGAGCAAGTGGGGGGGTCTGGGAGTGAAGTTCTGGTTGATTGGGTGTATAATTGTTGGAAAAGAGGTGATATTGTTGGGGTAAGGGATCCAAACTTGGGCACAAATTATAAGGCAGAGGAAGTGGAGTTGGTGTTGAAACTAGCTTTGTTGTGCTCACATTCAAATCCTTTGGCTAGGCCAAGCATGCGCCAAGTTGTGCAGTACTTGGAGAGAGATGTGCCTCTGCCAGACTTGTCTTTGCTTAGCTTATCTTCCACTGGATTAGCATTTGGTCTGCATGAAGACTTTCAGGATTGTCCAATGTCTTCATCCATGGATAGGCCAATCTCCCATACTTCTTCAATTGCTGAATCACTTCTCTCTGGGGGGCGTTGA 2001 0.4443 MFLKLVAVVFVLATTVASEDAVSFTYKGFQSSSHMYLDGGAEFSSEGMLKLTNHTRQQKGHAFFPSPIVFKNTTNGSVSSFSTTFVFAISSEYPNLSGHGIVFVVSPTKGLPNSLPSQFLGLFDDTNNGNSGNHVFGVELDTILNTEFDDINDNHVGIDVNGLKSVKSVAAGYYSDGGFKNLSLISGYPMQLWVEYDGPKKQIDVTLAPINIGKPESPLLSLSKDLSPILNNSMYVGFSSSTGSIQSYHYILGWSFKVNGQAQQLAFSELPKLPRRGSKEESKVLIVGLPLISLSLVIMVALAVVHVIKRKKFKELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKIEVAVKKVSHESRQGMREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLLYLHEEWEQVVVHRDIKASNVLIDSELNGRLGDFGLSRLYEHGTDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQVGGSGSEVLVDWVYNCWKRGDIVGVRDPNLGTNYKAEEVELVLKLALLCSHSNPLARPSMRQVVQYLERDVPLPDLSLLSLSSTGLAFGLHEDFQDCPMSSSMDRPISHTSSIAESLLSGGR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02056 666 Pfam Protein kinase domain 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02056 666 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02056 666 PANTHER - 38 616 - -
Phco3g02056 666 Gene3D Transferase(Phosphotransferase) domain 1 418 616 - -
Phco3g02056 666 CDD lectin_legume_LecRK_Arcelin_ConA 22 260 IPR001220 GO:0030246
Phco3g02056 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 277 IPR013320 -
Phco3g02056 666 FunFam L-type lectin-domain containing receptor kinase S.4 418 624 - -
Phco3g02056 666 Gene3D - 19 270 - -
Phco3g02056 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Phco3g02056 666 Pfam Legume lectin domain 22 270 IPR001220 GO:0030246
Phco3g02056 666 CDD STKc_IRAK 347 613 - -
Phco3g02056 666 FunFam L-type lectin-domain containing receptor kinase V.9 21 263 - -
Phco3g02056 666 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Phco3g02056 666 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Phco3g02056 666 SUPERFAMILY Protein kinase-like (PK-like) 322 621 IPR011009 -
Phco3g02056 666 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02056 666 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02056 Phco-Chr3 46158417 46160417 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco3g02056 Pkinase 9.5e-47 CL0016