Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02051 ATGTCGTTGCACCGTGCTGAAGAAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCTGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAAAATAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCCGGAAGCATGCCACAGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCTGTTCAAAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAGCAAGTATTTAGAGGCTATCAACCAAAAATGTAGTGTTGGCATGAGATTGAAGACGAGGTCTGAAGGGGATGATTCTACTGAAACAGACAAAAGATTTTCAGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTCTTCCTACAACAATATCATCTCAACCTGTTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCCCCTACTTTCTGGGATGCTGGGCTGACACAATCTGATATTACACAACTTGGCGTTATGGCCGAAAGCAAAAGGAGTGAAAGTAGTGCTCACATGTGGCATCATAACAGCAGCAATGGTATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTGTCCTTCTCATTTATATCTTGACACAACTGATGATAGCAAGAGCATATCAGCTTCGCCTATTTCAAAAACTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGACAAGGAGATCAACAAAGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGGATTGACCTTACTGATCATACAAGGAGCAGCTCTCTTTCTGTAGATAATGCATCTGGAATCACATCGGAGGGCAGAACTGATGTAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCCCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGGTATGAAAAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGCTCCAGCCAGGATGTGCACAAACTGAGCTCTGGGAGCAAACTACCAATCTCTTCAACGGAAGAGATTGTAATAAGCTCAGACACAACTGAGATCTGA 1980 0.4409 MSLHRAEEDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEQETDEVYAQITLVPENNQTEPTCPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVSKYLEAINQKCSVGMRLKTRSEGDDSTETDKRFSGTIIGVEDISPHWVNSKWRSLKVQWDEPPSFPRPDRVSPWEIEPILASLPTTISSQPVVIKNKRPRQASEVPDLGDTPLIAPTFWDAGLTQSDITQLGVMAESKRSESSAHMWHHNSSNGISMNQRKASWLSCPSHLYLDTTDDSKSISASPISKTHSERLNNDHCLDQVDKEINKVEPATGCRLFGIDLTDHTRSSSLSVDNASGITSEGRTDVNHESDISKASKEWKQEQLQVSPKETQNKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEKLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSTEEIVISSDTTEI 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02051 659 FunFam Auxin response factor 544 637 - -
Phco3g02051 659 MobiDBLite consensus disorder prediction 497 527 - -
Phco3g02051 659 FunFam Auxin response factor 277 350 - -
Phco3g02051 659 SMART B3_2 116 218 IPR003340 GO:0003677
Phco3g02051 659 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco3g02051 659 CDD B3_DNA 114 216 IPR003340 GO:0003677
Phco3g02051 659 ProSiteProfiles PB1 domain profile. 549 630 IPR000270 GO:0005515
Phco3g02051 659 SUPERFAMILY CAD & PB1 domains 552 625 - -
Phco3g02051 659 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco3g02051 659 Gene3D - 545 637 - -
Phco3g02051 659 Gene3D - 277 350 - -
Phco3g02051 659 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Phco3g02051 659 Gene3D - 113 217 IPR015300 -
Phco3g02051 659 Pfam AUX/IAA family 532 585 IPR033389 -
Phco3g02051 659 Pfam AUX/IAA family 592 636 IPR033389 -
Phco3g02051 659 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Phco3g02051 659 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Phco3g02051 659 FunFam Auxin response factor 114 218 - -
Phco3g02051 659 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02051 Phco-Chr3 46119730 46124199 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco3g02051 AUX_IAA 5e-14 CL0072