Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02039 ATGATTGTGCCTTGTGACGGTAAGTTTGCGAGTGAGCATGGCACTACCGCAGCTGCACCGTCTCTTCACGAAGGCACACGTAATCTTCAAATGCGTCGGATTCTCACACGCGTCAACCTTTCACGCGCCTTGCTTTGGGCCATGTCAAAGACATTGATGGAGGAAGTAATGGCCAGTTGGTCAGAGGGGTCAGAAGATGATGACCTTGTGAGAGAGCTTTTGGATGATGGGCCTCCTCTTCTTGTGCTGCCACAGGAGGCAAATCAACCCCCCATAACAAACGCCTCTTCAAGTGACCATGCTTTTAATAGGTTCCTCTCCAACATTTACTCAGGACCTACTATCTCAGATATTGAAAATGCTTTGTCAGTGAACAACCAAAGAGACCACTTCCCACCACTCTCATCAGCCAGCAGAGTTTCCATTTTGGAGAGGGGTTTGAGCAAGATTGAGAATAAGTATACCCTCAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCATTGAGGACCCAGACACTCTTATCATAACATATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTCCTCATGGGCCAACCACACCAATCTCAATCTCATCCACCCATCAAGAAGTCCAAGCCCACTTCTTCACAGGGCCAAGCCCAAGCCCATAAAGCAGATTATGTTCATGGAGCCCAGGAAGCCCAATCAAATGCCACTTCGGGTGTGGTTCCATCAACTTCATTGGACTCTCCACAGGACATGGCCCAGCAAAACTTGGGCTCACAAGGGTTGCTTGAAGATATGGTGCCATTCATGATTCGGAACCCAGCAAACAGTGTGAACAGTGCTCACACAAAATTTTCTTGTGCTACGTTTCGTTCTCCTCCAACTTCACCTCTGTGGAGTTCTAATTACTCCACCTCCTGCTACACCGTTGGCTTAAATTCTAGCACCTAA 1062 0.4718 MIVPCDGKFASEHGTTAAAPSLHEGTRNLQMRRILTRVNLSRALLWAMSKTLMEEVMASWSEGSEDDDLVRELLDDGPPLLVLPQEANQPPITNASSSDHAFNRFLSNIYSGPTISDIENALSVNNQRDHFPPLSSASRVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPHQSQSHPPIKKSKPTSSQGQAQAHKADYVHGAQEAQSNATSGVVPSTSLDSPQDMAQQNLGSQGLLEDMVPFMIRNPANSVNSAHTKFSCATFRSPPTSPLWSSNYSTSCYTVGLNSST 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02039 353 FunFam WRKY transcription factor 154 227 - -
Phco3g02039 353 Pfam WRKY DNA -binding domain 167 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02039 353 Gene3D WRKY domain 162 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02039 353 MobiDBLite consensus disorder prediction 235 257 - -
Phco3g02039 353 SMART WRKY_cls 166 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02039 353 SUPERFAMILY WRKY DNA-binding domain 164 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02039 353 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 256 IPR044810 GO:0003700
Phco3g02039 353 ProSiteProfiles WRKY domain profile. 161 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02039 353 MobiDBLite consensus disorder prediction 235 282 - -
Phco3g02039 353 MobiDBLite consensus disorder prediction 267 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02039 Phco-Chr3 45959553 45965494 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02039 WRKY 2.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02039 3 45959553 45965494 Phco3g02039 3 45959553 45965494 ECH