Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02031 ATGGGTCCAAAAAAGGCTACAATATTATCATTTACAAAAGCCACCATTAACAAAGTGATCAAAGTTCCTGTTTTGACCCTTCGTGCTTCCTTCCACGACCCTTCTCATCAAACCCCTAATCATAAAAGGGGTGGTTTGTTGATGGGTGCTTGCTGGAGTAATAGGATTAAGGCTGTGAGTCCTTCCAATACAGGGATAACCTCGAGAAGTGTCAGCAGGAGTGGCCATGACATCAGCTCAACTAGCAGGAACTCTTCAGCCTCTGTATCCGTCACTTCTCGGAGTGAAGGTGAAATCTTGCAATCGTCCAACTTGAAAAGCTTCAGCTATAGTGAGCTAAGGGTGGCCACAAGAAATTTCCGCCCAGATAGTGTCTTGGGGGAGGGTGGTTTTGGTTCAGTTTTTAAGGGCTGGATTGATGAACATTCACTTACTGCTACCAAACCAGGAATAGGCATGATTGTTGCTGTGAAGAGACTTAACCAAGAAGGTTTCCAGGGTCACAGAGAATGGCTGGCTGAAATCAACTATCTTGGGCAACTGCAGCATCCTAACCTTGTCAAGTTAATAGGATACTGCTTTGAGGATGAGCATCGGCTTTTGGTTTATGAATTCATGCCTAAGGGTAGCATGGAAAATCATCTTTTTAGAAGAGGTTCTTACTTTCAGCCTTTCTCGTGGAGTTTGCGAATGAAAATAGCTCTTGGGGCTGCGAAGGGCCTTGCTTTTCTTCACAGTACAGAGCCTAAAGTCATATACCGTGACTTTAAAACTTCAAATATCCTACTTGATACACATTATAACGCCAAACTTTCTGATTTTGGGTTGGCCAGAGATGGTCCAACTGGTGATAAAAGCCATGTCTCTACTAGGGTCATGGGAACCCGAGGATATGCGGCTCCAGAGTATTTAGCAACAGGTCATCTCACTGCCAAGAGTGACGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGATATCGGGAAGACGAGCTATAGACAAGAACCAGCCATCTGGGGAGCATAACCTTGTTGAATGGGCCAAGCCTTACCTATCTAATAAACGAAGAGTTTTCCGTGTAATGGATCCACGTTTGGAAGGTCAATATTCACATAGTCGAGCTCAAGCAGCAGCTGCACTTGCTATGCAATGTCTTTCTGTAGAGTCCAAGTGCAGGCCAAATATGGAGGAGGTGGTAAAAGCATTGGAGCAAATTCAGGAATCAAAGGACATGCAGAGAAAAGGTGGTGATCATAAACATCATCATCTACGCAATTCCGGCCAAGGGCGTTCCAACGGCATCCAAGGTGGTGGAGATGTGCCTAGAATGCCTTCTACTTATCCCAGACCTACAGCTTCTCTCCTTGGCGGTTGA 1374 0.4483 MGPKKATILSFTKATINKVIKVPVLTLRASFHDPSHQTPNHKRGGLLMGACWSNRIKAVSPSNTGITSRSVSRSGHDISSTSRNSSASVSVTSRSEGEILQSSNLKSFSYSELRVATRNFRPDSVLGEGGFGSVFKGWIDEHSLTATKPGIGMIVAVKRLNQEGFQGHREWLAEINYLGQLQHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDTHYNAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTAKSDVYSFGVVLLEMISGRRAIDKNQPSGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSHSRAQAAAALAMQCLSVESKCRPNMEEVVKALEQIQESKDMQRKGGDHKHHHLRNSGQGRSNGIQGGGDVPRMPSTYPRPTASLLGG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02031 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Phco3g02031 457 CDD STKc_IRAK 126 405 - -
Phco3g02031 457 MobiDBLite consensus disorder prediction 408 457 - -
Phco3g02031 457 MobiDBLite consensus disorder prediction 60 93 - -
Phco3g02031 457 Gene3D Transferase(Phosphotransferase) domain 1 206 429 - -
Phco3g02031 457 PANTHER OS01G0588500 PROTEIN-RELATED 84 406 - -
Phco3g02031 457 FunFam Serine/threonine-protein kinase BIK1 86 205 - -
Phco3g02031 457 ProSitePatterns Protein kinases ATP-binding region signature. 126 158 IPR017441 GO:0005524
Phco3g02031 457 Pfam Protein kinase domain 123 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02031 457 FunFam Probable serine/threonine-protein kinase PBL8 206 421 - -
Phco3g02031 457 Gene3D Phosphorylase Kinase; domain 1 95 205 - -
Phco3g02031 457 SUPERFAMILY Protein kinase-like (PK-like) 87 402 IPR011009 -
Phco3g02031 457 ProSiteProfiles Protein kinase domain profile. 120 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02031 Phco-Chr3 45725529 45730565 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco3g02031 Pkinase 1.3e-46 CL0016