Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02027 ATGGCTGAGGTGGTGAAATCGGAGGAGTGTTGCCTGGAGAATAAGCAGTCTACTGCTGCTTCTTGCTCCTCTGTTTCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCTGGGATATGTAGCCCTGCATCCACATCACCTTCCCATCGGCGGACCACTGGTCCTATCAGGCGTGCTAAGGGTGGTTGGACAGCACAGGAGGATGAAACATTAAGGAATGCTGTGGCAGTTTTTAAGGGAAAAAGTTGGAAGAAAATAGCCGAGTTTTTTCCTGATAGATCAGAAGTCCAGTGTTTGCATAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGACGATAAAATTGTTGAACTGGTGACAAAATATGGGCCAACAAAATGGTCTTTGATAGCCCAGTCTTTACCTGGCCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGAGATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCATTGGAATAGTTCTTTGAAGAAAAAGTTAGATTTTTATTTAGTTACAGGAAGACTTCCACCAATTCCCAAGAATAGTCCACAAGTTACTGTCAAAGATACAATTAGACGTTCTGCTAGTAAATCGATACTTGTTTATTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTTGATGACAGTGGCAGGAATCAGTTTGAGTCCTCGGGAACTGTTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCTTCCAACATTGATCTTAGGTGTAGCAACTCAGAACAACTGTCAAAAGGTAATTGGGGAGTAACTTATGGGCCAAGACCTGACAATTCTGGATTCAATGGACACTCCACTTTTGAGCATTGTACAAACAATGGTGACATCAGCACTACAAGCTTAATTGCAACATCTTTGCAAGAAAGTCCGACCTGTGGTTCTCTGTGTTATGAGCCACCACAGTTACATAGTTCAATTCCCATAGATTCTCTTTATTTAAATTATATCTGCCAGCAGAATGAGTTTTGTTCGACTCCAACTTTGTCACCTATTGGTTTCTTCACTCCACCTCGTGTGAAGGGTGATGAATTATGCACCGAGACACCTGAATCAATTTTGAAAAGGGCTGCCAATACTTTTCCAAATACACCTTCCATATTGAGGAGGAGGAGAACTGAGGTCCAAGCACTCACTAGTCCTAGTAAAATTTTGAAGGTAGTTAATGATCCACGTTCTTCTAATGAAACAGGGAGAACCAATGACGATTCTGGTTCTAGGCATTTCTCCAGGAGTCCGGCAAGCAATGGCAATGTGAATGACATTCCCAGTAATAAGACATTCAATGCATCTCCCCCATATAGGTTAAGATCCAAGCGAACTGGGATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCTTTTGACAAAGAGAAGAATGATGACAAGAGAAGCAATGTCATGACCGAAGATTGTCTCCATGAAAAAAAATTGGTTGCCACATAG 1683 0.4195 MAEVVKSEECCLENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVTKYGPTKWSLIAQSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLVTGRLPPIPKNSPQVTVKDTIRRSASKSILVYSNKELNAAVETSSETTAISKLDDSGRNQFESSGTVREVGDSSSVPANESADSDCVECKPGSSNIDLRCSNSEQLSKGNWGVTYGPRPDNSGFNGHSTFEHCTNNGDISTTSLIATSLQESPTCGSLCYEPPQLHSSIPIDSLYLNYICQQNEFCSTPTLSPIGFFTPPRVKGDELCTETPESILKRAANTFPNTPSILRRRRTEVQALTSPSKILKVVNDPRSSNETGRTNDDSGSRHFSRSPASNGNVNDIPSNKTFNASPPYRLRSKRTGIVKSVEKQLEFAFDKEKNDDKRSNVMTEDCLHEKKLVAT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02027 560 FunFam Transcriptional activator Myb isoform A 112 164 - -
Phco3g02027 560 MobiDBLite consensus disorder prediction 458 513 - -
Phco3g02027 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 213 IPR017930 -
Phco3g02027 560 CDD SANT 166 209 IPR001005 -
Phco3g02027 560 FunFam Transcription factor MYB3R-2 165 230 - -
Phco3g02027 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 106 IPR017930 -
Phco3g02027 560 MobiDBLite consensus disorder prediction 38 52 - -
Phco3g02027 560 Gene3D - 59 111 - -
Phco3g02027 560 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Phco3g02027 560 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Phco3g02027 560 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Phco3g02027 560 MobiDBLite consensus disorder prediction 269 298 - -
Phco3g02027 560 MobiDBLite consensus disorder prediction 269 303 - -
Phco3g02027 560 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Phco3g02027 560 Gene3D - 112 163 - -
Phco3g02027 560 MobiDBLite consensus disorder prediction 22 64 - -
Phco3g02027 560 MobiDBLite consensus disorder prediction 458 479 - -
Phco3g02027 560 FunFam Transcriptional activator Myb isoform A 59 111 - -
Phco3g02027 560 PANTHER MYB PROTEIN-RELATED 60 132 - -
Phco3g02027 560 ProSiteProfiles Myb-like domain profile. 107 158 IPR001005 -
Phco3g02027 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 162 IPR017930 -
Phco3g02027 560 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Phco3g02027 560 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Phco3g02027 560 CDD SANT 63 106 IPR001005 -
Phco3g02027 560 MobiDBLite consensus disorder prediction 486 513 - -
Phco3g02027 560 SUPERFAMILY Homeodomain-like 109 205 IPR009057 -
Phco3g02027 560 CDD SANT 114 158 IPR001005 -
Phco3g02027 560 Gene3D - 165 237 - -
Phco3g02027 560 SMART sant 163 211 IPR001005 -
Phco3g02027 560 SMART sant 111 160 IPR001005 -
Phco3g02027 560 SMART sant 59 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02027 Phco-Chr3 45625752 45631207 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02027 Myb_DNA-binding 2.7e-13 CL0123