Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01996 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCCAAATCATCAGCAGCAAGGCAACAACACTGCTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCTCCACCGTCACAACCTCATGGACTCGGTGGCAGTGCCACCGCCGGGTCCATAAGGCCAGGTTCGATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCACAGAAGTGTCCAAGATGTGAATCCGCCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGAGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCGGCAAACTCCGATCGCCAAACGGCGAGTGCCGGCTCTGCTTCCACAACTAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGTGTTCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTCGGTGATCACCACCTTGGTGTTGGTGGTGGAGGAGAAATAGGGTTAAACTATGGCTTGAACTATGGCGCAATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTTCATATAGGAAGCGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGGTGATGTCTCAGTTTGCTTCTGTGAAAATGGAAGATAATCATCCGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAGCAATATTGGAATGGTGGTGGTGGTGGTGCCGCTTCTGCTTGGACTGATCTTTCGGTCTTTAGCTCCTCTTCCACTACTAGTAACCCACTATAG 1077 0.5209 MVYTSIPAYIDPANWQQQQPNHQQQGNNTAVSSHLILPPPIQPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCESANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGVGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGSALNGGGGSVLSGLDQWRMPQTHFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHPELGLPRQFLGVNNNPNTNEQYWNGGGGGAASAWTDLSVFSSSSTTSNPL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01996 358 MobiDBLite consensus disorder prediction 37 52 - -
Phco3g01996 358 MobiDBLite consensus disorder prediction 16 65 - -
Phco3g01996 358 MobiDBLite consensus disorder prediction 138 174 - -
Phco3g01996 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 164 IPR045174 GO:0003700|GO:0006355
Phco3g01996 358 MobiDBLite consensus disorder prediction 128 177 - -
Phco3g01996 358 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Phco3g01996 358 MobiDBLite consensus disorder prediction 16 35 - -
Phco3g01996 358 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Phco3g01996 358 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01996 Phco-Chr3 45243851 45245094 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco3g01996 zf-Dof 5.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01996 3 45243851 45245094 Phco3g01996 3 45243851 45245094 ECH
Phco3g01996 3 45243851 45245094 Phco1g01577 1 53175391 53176823 PCT