Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01986 ATGGAGTGTGAAGTGAAGTTACAAGGGGGAGATCTGCATGCAGAGGTGGTAACTGAAACAAACCCGGTTGGTTTTGACGCCATGGAAGATGAACAAACTTTGTCGGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGATGCGTTTCTGGGTGTCAATGAGGCTTCCATGTTCTACGCAGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCATCTTCATCTTCTGCACCACCACTTCCTCTGAAAACTACCACATGTTCCACCACAACCACAGCGACCACCGCCACTTCCTCTTCTTCCTCTTCCTCTTCATGGGCCGTCTTGAAGTCAGATGTTGAGGAAGATGTGGAGAAAAACCATTGCAACGGCTCCATGCAAGACCAATTTGATGCAACAGCTTTGTCTTCCACTGCTTCCATGGAGATTTCCCAACAGCAGAACCCTGATCCTGGACTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTGGAGGCCAATGATTTCTTCGATCCTGCCTCAATCTTTCAGAATGACGAAAGTGAAGACCCTTTAATAGAATTTGGCGGACTGGAGGAACAGGTGTCACTGCAAGAGGAGCAACATGAACTGGTGCATCAGCAAGAGAACACTGAAGAGGATCGCAAGGTTCCAGTGTGTGAAGTTATCAAAGGAGAGGAAGAAGGTGCTGGTGGTGGTGTAGTAGATGATGAAATGAGTAATGTCTTCTTGGAGTGGCTTAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCAACGATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTTAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAACGGCGCAAGGATAATAGTGGCAACATTAACAATGCTCTTCCGGCACAGTTTCAAGATCCCAGTGCCCAGAACAACCAGAACGCGCACACGAGTGGCTCATTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACACCCTGGTTGAATCCTCAAACTTTTGGGACAGATCAAGCCCCTGTCATGGTTCCATCACAGCCGTATTCACAACCCGTGGTTGGGTATGTGGGTGACCCTTACACTAGCGGTTCTGCTCCAAATAACATCACGGCCAATCATAACCATAACAACAACCCTTACCAACCAGGCACGGACCAATACCACATGTTGGAATCAGCACATTCATGGCCTCATTCTCAGTTCAACGTTGCTTCTCATTATAACCAGTCTTATGGGGACAACGGTCTTTTCACACATGGGGGTTTTGGCGGCTATGCCAATAACCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGATTAGGCCCCTCTGCAACCAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAATTACAATGGCAATCACCTCCAGAACCAAGGGTCTGACCCACATGCAAGACTGGGAAATGATAATTGCACCACTGGTTTGGTTGCACCTCATCAACCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCTATGGCGGGTGGCCCGGCTGGTCCTTTGGCACCGGTGGTTCCCACCGACCCACTGTCCGGACAAACGGTGGTGGACCGATCCATCATGCACACACAGAATTCTCATCAGAATCGAGCATCATCCGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTTTTGAAGCAAAGTGATGTGGGAAGCTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGACTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGCAAATATATGATCAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAAAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGACTAATGCATCAAATACAGCTGGAACTGCTGCTAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2268 0.4687 MECEVKLQGGDLHAEVVTETNPVGFDAMEDEQTLSVAEREMWLNSDQDAFLGVNEASMFYADFPPLPDFPCMSSSSSSSSAPPLPLKTTTCSTTTTATTATSSSSSSSSWAVLKSDVEEDVEKNHCNGSMQDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFQNDESEDPLIEFGGLEEQVSLQEEQHELVHQQENTEEDRKVPVCEVIKGEEEGAGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKDNSGNINNALPAQFQDPSAQNNQNAHTSGSFAPESNSCFNNQTPWLNPQTFGTDQAPVMVPSQPYSQPVVGYVGDPYTSGSAPNNITANHNHNNNPYQPGTDQYHMLESAHSWPHSQFNVASHYNQSYGDNGLFTHGGFGGYANNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRNYNGNHLQNQGSDPHARLGNDNCTTGLVAPHQPNSAAANWMYWQAMAGGPAGPLAPVVPTDPLSGQTVVDRSIMHTQNSHQNRASSDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQHGTNASNTAGTAANNGRSSPPKPKAEKK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01986 755 Pfam B3 DNA binding domain 608 704 IPR003340 GO:0003677
Phco3g01986 755 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 258 723 IPR044800 GO:0003700
Phco3g01986 755 Gene3D - 603 722 IPR015300 -
Phco3g01986 755 SMART B3_2 607 709 IPR003340 GO:0003677
Phco3g01986 755 MobiDBLite consensus disorder prediction 320 366 - -
Phco3g01986 755 CDD BfiI_C_EcoRII_N_B3 605 706 - -
Phco3g01986 755 MobiDBLite consensus disorder prediction 711 755 - -
Phco3g01986 755 ProSiteProfiles B3 DNA-binding domain profile. 607 709 IPR003340 GO:0003677
Phco3g01986 755 MobiDBLite consensus disorder prediction 314 366 - -
Phco3g01986 755 MobiDBLite consensus disorder prediction 724 745 - -
Phco3g01986 755 SUPERFAMILY DNA-binding pseudobarrel domain 606 702 IPR015300 -
Phco3g01986 755 FunFam B3 domain-containing transcription factor FUS3 603 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01986 Phco-Chr3 44980852 44983778 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco3g01986 B3 3.8e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01986 3 44980852 44983778 Phco3g01986 3 44980852 44983778 ECH