Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01985 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACCCTCACCTGCAACACCTTCACTATGTTCTTCTCTTTGCACTTCTTGTTCCTCTTTCCTTTGCTGCAAATGATGAAGTTACTGCATTGGTTTCATGGATGCATATCTCTTCCAAAACTCCTTCAGCCTTTTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAGTTGGTCTTACATCAAATGCTCTTCAGCAAACCTTGTCATAGAGATTACCATTCAAAATGTTGAGCTGGCCCTTCCCTTCCCTTCAAAAATCTCATCCTTTCCTTTCCTTCAGATATTGGTCATTTCAGGGGCTAATCTCACTGGGACTATCTCACCTGACATTGGAAACTGTTCTGAGCTTAGAGTACTTGACCTTAGCTCCAACAGTCTTGAGGGTGGCATTCCTTCAAGTATTGGGAGGCTCAAAAACCTCCAAAGCTTGAGCTTGAACTCCAATCATCTCACAGGGCAAATCCCAAGTGAGCTTGGTGGTTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAGTCTTAGTGGAGATCTTCCTGTGGAGCTAGGAAAGTTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACGGTGGCATTGCGGGGAAGGTTCCAGATGAGCTAGGAGATTGCAGAAATTTGACAGTGTTGGGTCTTGCTGACACAAAAATTTCTGGTTCATTGCCTGCTTCCCTAGGCAAGCTAAGTAGGCTTCAGACCTTGTCTATTTATGGCTCTATGATCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGTCAACTTATTTTTGTATGAGAATGACCTCTCTGGTTCCCTGCCAAGAGAGATCGGTATGCTCCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGTTGGGGACATTCCTGAGGAAATTGGCAACTGCAGAAAGTTGAAGATTCTTGATGTTTCCTTAAATTCTCTCTCTGGTGGAATACCCCAAAGTTTGGGGAAACTCTCAAATCTTGAAGAACTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCACCAGCTCTGTCCAATCTCTCAAACCTCGTACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCTATTCCACCTGGGCTTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTGGAAGGTCCAATTCCATCTTCGTTGGGAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCTGGCCTGTTCAAACTTCAAAATTTAACAAAGCTTCTGCTGATCTCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGCAACTGCAGTTCCCTCATTCGCCTCCGGCTCGTAGACAACAGAATCAGTGGGGAGATACCAAGAGAAATTGGCTTCCTTAACAGCCTTTATTTCCTTGATCTGTCTGAAAATCAGCTGACTGGGTCAGTACCACTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCCCTTTCTGGCGCTTTGCCTAATTATTTGTCTTCTCTCACAAGGCTAGAGGTCTTGGATGTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTACTTAGAGTCATCTTAAGTAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTTAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAATTTTTCAGGGAACATTCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATCTGAGTCACAATGCATTATCTGGAGTGATCCCACCAGAGATTTCTTCTCTGAAAAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGCGACTTGATGGCCTTTTCAGGGCTGGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAAATCACTGGTTATCTTCCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAGTGCTGCTATTACAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCTATTGGACTGCTCAGTGCCTTGATTGTTGCAATGACAATCTTTGGAGTTGTTACTATCTTTCGAGCAAGGAAAATCATTCAAGCAGACAATGATTCAGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGTTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGAGATATCATTGCTGTGAAAAGACTATGGCCAACGACAATAGCTGCAAAATGTGATAATCAAAGTGACAAGTTAGCAGTTAATGGAGGGGTACGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGGTTACTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGCAATTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTGTCGCTTATTTGCACCATGATTGTGCTCCTCCCATTGTTCACAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGACTTGCAAAACTTGTTGATGAGGGAGATTTTGCTAGATCTTCAAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGGTACATGATGAAAATAACAGAGAAAAGTGATGTTTATAGCTATGGCATTGTTGTACTAGAAGTCCTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCATATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGGCCAGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACAATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATATGTGAAAGTTGACATGCTTCATGCATCTTCTGCAAATGATCAACAAGATAGAAATCTTTCTAACCAAGAACCAATGTCAATGCTAAGTACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCTATCGTCCTCAAACACCAAAGTAA 3456 0.4259 MLVVEFLRELPMSMPRQALSNQNHNQMSRQAFITNHHHHPHLQHLHYVLLFALLVPLSFAANDEVTALVSWMHISSKTPSAFSSWNPLDSNPCSWSYIKCSSANLVIEITIQNVELALPFPSKISSFPFLQILVISGANLTGTISPDIGNCSELRVLDLSSNSLEGGIPSSIGRLKNLQSLSLNSNHLTGQIPSELGGCVNLKTLDIFDNSLSGDLPVELGKLSNLEVIRAGGNGGIAGKVPDELGDCRNLTVLGLADTKISGSLPASLGKLSRLQTLSIYGSMISGEIPPEIGNCSELVNLFLYENDLSGSLPREIGMLQKLEKMLLWQNNFVGDIPEEIGNCRKLKILDVSLNSLSGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLSNLVQLQLDTNQLSGSIPPGLGSLTKLTVFFAWQNKLEGPIPSSLGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPREIGFLNSLYFLDLSENQLTGSVPLEIGNCKELQMLNLSNNSLSGALPNYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSRNSFSGPIPSSIGQCLGLQLLDLSSNNFSGNIPPELLQIEALDISLNLSHNALSGVIPPEISSLKKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKITGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSSAAITKMLNGTNSKRSEIIKLAIGLLSALIVAMTIFGVVTIFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTIAAKCDNQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDEGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREEYVKVDMLHASSANDQQDRNLSNQEPMSMLSTSSTNLHLHYSPYRPQTPK 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01985 1151 Pfam Protein tyrosine and serine/threonine kinase 813 1091 IPR001245 GO:0004672|GO:0006468
Phco3g01985 1151 Pfam Leucine Rich Repeat 539 560 IPR001611 GO:0005515
Phco3g01985 1151 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 793 900 - -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 265 359 IPR032675 -
Phco3g01985 1151 SMART LRR_sd22_2 175 198 - -
Phco3g01985 1151 SMART LRR_sd22_2 368 394 - -
Phco3g01985 1151 SMART LRR_sd22_2 657 682 - -
Phco3g01985 1151 SMART LRR_sd22_2 416 448 - -
Phco3g01985 1151 SMART LRR_sd22_2 199 228 - -
Phco3g01985 1151 Gene3D Transferase(Phosphotransferase) domain 1 901 1120 - -
Phco3g01985 1151 ProSitePatterns Protein kinases ATP-binding region signature. 816 848 IPR017441 GO:0005524
Phco3g01985 1151 Pfam Leucine rich repeat 345 405 IPR001611 GO:0005515
Phco3g01985 1151 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Phco3g01985 1151 SUPERFAMILY L domain-like 457 718 - -
Phco3g01985 1151 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 552 637 IPR032675 -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 638 725 IPR032675 -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 457 551 IPR032675 -
Phco3g01985 1151 FunFam Predicted protein 218 315 - -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 360 456 IPR032675 -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 173 264 IPR032675 -
Phco3g01985 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 442 729 - -
Phco3g01985 1151 Gene3D Ribonuclease Inhibitor 63 172 IPR032675 -
Phco3g01985 1151 SMART LRR_typ_2 175 199 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 320 344 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 392 416 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 512 536 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 368 391 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 680 705 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 440 464 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 584 608 IPR003591 -
Phco3g01985 1151 SMART LRR_typ_2 657 679 IPR003591 -
Phco3g01985 1151 MobiDBLite consensus disorder prediction 1112 1151 - -
Phco3g01985 1151 Gene3D Phosphorylase Kinase; domain 1 794 900 - -
Phco3g01985 1151 SMART serkin_6 810 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01985 1151 SUPERFAMILY RNI-like 239 526 - -
Phco3g01985 1151 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Phco3g01985 1151 MobiDBLite consensus disorder prediction 1112 1143 - -
Phco3g01985 1151 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 61 217 - -
Phco3g01985 1151 PANTHER OS05G0588300 PROTEIN 217 323 - -
Phco3g01985 1151 Pfam Leucine rich repeat N-terminal domain 61 101 IPR013210 -
Phco3g01985 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Phco3g01985 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 901 1111 - -
Phco3g01985 1151 ProSiteProfiles Protein kinase domain profile. 810 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01985 1151 SUPERFAMILY L domain-like 61 334 - -
Phco3g01985 1151 PRINTS Leucine-rich repeat signature 515 528 - -
Phco3g01985 1151 PRINTS Leucine-rich repeat signature 657 670 - -
Phco3g01985 1151 SUPERFAMILY Protein kinase-like (PK-like) 793 1093 IPR011009 -
Phco3g01985 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 316 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01985 Phco-Chr3 44956474 44960345 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g01985 PK_Tyr_Ser-Thr 1.1e-40 CL0016