Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01981 ATGTCGGGAAGAAGGTCAAGGGCATCAAAGTTGTCTCAGAATGAGATTAATGACCTCGTGTCTAGGTTGCAACTACTTCTTCCCCAAATCAACCAAAGAGACAACTCAAGGCAATCAGCCTCCAAGATCTTGAAAGAAACATGTTGTCACATTCGAAGATTACAGGAAGAGGTGGAACAACTCAGTGAGAGACTTTCAGAGCTCATCGATTCCGTGGATATCAATGGCATTGATAGAGAAATTTTAGAAAACATTTTGCAACAATGTTAA 270 0.4037 MSGRRSRASKLSQNEINDLVSRLQLLLPQINQRDNSRQSASKILKETCCHIRRLQEEVEQLSERLSELIDSVDINGIDREILENILQQC 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01981 89 Gene3D - 13 88 IPR036638 GO:0046983
Phco3g01981 89 Pfam Helix-loop-helix DNA-binding domain 14 55 IPR011598 GO:0046983
Phco3g01981 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 71 IPR036638 GO:0046983
Phco3g01981 89 Coils Coil 44 71 - -
Phco3g01981 89 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Phco3g01981 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 54 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01981 Phco-Chr3 44852846 44857933 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01981 HLH 6.5e-05 No_clan