Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01975 ATGGCACTAAATAAGACAGGAAGCATGTTAGGTACCAACACTGGTAAGGAGCCTAGCGTGTTTCCTCAACATGCCCAACAAGATCTATCTGGTAGTGTTTCAAATACAGGGCGTCATGTGCAAAATAATATCACTATGCAGGCAGGGGAAGAATTTTCTGGGAATGTTGGTCGTGATGGAATTGCTGCTGCAAGAGTTGTTTCACGAGTTATACCTCGAAATCATGAGAATGTGTTTGGGTTAAATAGAGAGAATGGCAATGTGAGATATGAAGATCTTACTAATATTTTGGGGCTGAGAAGAATGAACTCTGAGAATTGTTCTGACATATCTGACTTTGTATCTATAAAACAGTCAGTTCAGGAGATGGAAAATGGAGCTGCTGAAAACATTTTTAACAAAATTCAAAAGGGTGATGGTATGTTGAGGAAGGCTGCTCAAGAACCGGTGGGTGACCAGTCAGGTCTCACATTTGTATCACCCCTTCATAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAGTTATAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTTTGCAGTTTTGGTGGAACAATATTACTAAGACCAAGTGATGGGAAACTCAGATATGTAGGGGGAGAGACCCACATTGTATCTATTCCAAAGGATATTTCGTGGCAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCCGGGGAGGATCTTGATGCTCTAATATCCGTTTCCTCTGATGAAGATCTTCAAAATATGAAAGAGGAATACCATGGACTTGAAAGACATGAACGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCTGAAGAGACATCATCAACAGAGATGAGTGCAGTTCAGCAGAGTGATCCTGATTACCAGTATGTTGTTGCCGTAAATGGCATAGGAGACTCTACTAGAACAAACATTGGGGGGCAAAATTTAACAAATGAATCCAGTCAGTTGGGGACAGATTTGAACTTTACTCCAGTTCTCCCAAAAACTCCAAATGCTTCTCCTTTGGAGATCAGGGATGGTATTAATGCTTTAAATCCAGACGGGATTTTGAATGATTCCCTGAATTTGCAAAGGCCATTGTCAATTCCTCCCACTTCAATTCCAGTAACTGGTTCTAACACAGGTTATATACAATTACTCGGTGACCACTCATGTCAGGGAAGTATTGAGAGCAATGCATCATATGCTACTACTCATCTACATCCTGAGTACTCTAATATAAGCACTGCTGGTTGCATATACCCTCAGCATGTGGCTGCTACTTTGTCTAGTGACACTTATCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGAGGTCATTTAGACTACAATCCTAGCAAGGAATTAGTGACTCCTGTATATGTTAATCCCAGAGATGAAATTTTTGGTGGAAGGTTCTTGCAAAGGGAAAGGGTCTACTCTGAAATTCCTATTTCATACTTGGATGATGCAATCTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATACCCCATGCCTTTTCTGATCCACAGTTGCTAGATAGTGGAGTAAGGTCTGGTTACTGCTCCCGAAATGGATATGGTCAATCTTTCTCCCTGAACCTTGAAAACGGTCAATTATCTTCATTGTTAATCCCAAGTGTATCTCAAGTGAATGCTATGGAGCATCAACATGATTCCATTGTCCATCATCCTCAAATACAAAGTACAACACCAAAAGTGGAGTCAGCTGAGGCACACAAAAGGCAAGATTTGGCGTCTTCTCCATACTATGAATCCTTGGGAATGAATGATCTTATTGACATGGATAACATATTAACTGAAAAAAATAACTTAATTGCTCAAACTGACTTGAGTATACCCAGCTACGATGCAAAGGATGTTCTGGAAAATTCTATGAAGTTAGAAAGGATGAAGTTAATTGAACAAAATAATTCTGTTCACAAGGATACCAAGGTTCATCAGGGGGAATCAACTGTCATTGACAAGGGATTTGTGACTGAGTTGCATCTTTTGGACTCTTTCCCTGCTAATAGCTTAAATGCTAATACTAATATGCAAAAGAATAGGGAGCTACCCTTTGAGGGTATTGTACCTGCTCCATCAGACACGATGGGCGTCTCCTTAAATAATATTGGGGAAAAGACTGTATTTGATTCTTTGGCTGGTGAACAAGGGTTTGACTTTTCATTGCCCAGAAATTTTGACTTAAATGCTCCAATTTTAAATTCTGAAGTAGGCTCTTGTGATAGAAGTTCTCGAGGAGACCATAGGTTCAAGCTGTCCATTCACCCAGATTCCCTTAAAGCTGCAGAAATTCATCTTTCGAACAATCAGATGCATATAGGTTTTCAAGAAAATCCTACAGTAGGCTCTGGAAATTTGTATCATGCTGCATTTTGTGATGATCTTGGTCCAAGTCTAAACATGCCTATGAATGGCCTTGATAATGCAAGCAATATTATGCCATTTAAAAAGGCACCATCTTTTTTTGATGACTTCATTATCGACACTGGTAAAATGGTGGATCAGTTTATCCCCAAACACTCTGCCTCAGGAATGTCAAATGTTGACGATAAAATTTCAGAACAACCAAAAGTTTTAGAAGGCTGTACTGATGCGAATCAAGTGGAGTCATTCACAGTAGCAAACATGACTCGTGTTGTTCATTCATATAGTTCGGGTGATATTGGAAGTGAAGTTGTATCCCCATCTCATACGGAAGCTGGGAGCATCATCCCCGAGTCTGAACCTGAGGATTTTAGTGAAGACAAAAATGAATTTCTTTCTGATGCAATGATGGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATTATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTAGGTTCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAACTGATATTGCTATAAAAAGAATTAAAAAGAGTTGCTTTGCAGGAAGGTCTTCTGAACAAGAACGGTTGGCAAAAGATTTTTGGAGAGAGGCTCAGATCCTTTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGACGGGAGGAACTCTAGCAACTGTAACAGAGTACATGGTTAATGGTTCCCTTAGGCACGTCCTTGTAAAGAATAATAGATTACTTGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAATATAGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTCAATCTAAGGGACCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTGGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTATTGAATGGGAATAGCAGTCGGGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTTAGACCTACTGTGCCTGATCGATGCGATTCTGAATGGAGAAAGCTTATGGAAGAGTGTTGGTCGCCTGAGCCCGAAAACCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCTATGTCTGTAGTCCTTCAACCAAAAGGGAATGGTCAGGCATATCAGCTAAGACCCTCCTGA 3783 0.4034 MALNKTGSMLGTNTGKEPSVFPQHAQQDLSGSVSNTGRHVQNNITMQAGEEFSGNVGRDGIAAARVVSRVIPRNHENVFGLNRENGNVRYEDLTNILGLRRMNSENCSDISDFVSIKQSVQEMENGAAENIFNKIQKGDGMLRKAAQEPVGDQSGLTFVSPLHRYEASQSNGFSGSGVIDDFLSGKMKFLCSFGGTILLRPSDGKLRYVGGETHIVSIPKDISWQELMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEMSAVQQSDPDYQYVVAVNGIGDSTRTNIGGQNLTNESSQLGTDLNFTPVLPKTPNASPLEIRDGINALNPDGILNDSLNLQRPLSIPPTSIPVTGSNTGYIQLLGDHSCQGSIESNASYATTHLHPEYSNISTAGCIYPQHVAATLSSDTYPYQHGDVGQPKKLNGGHLDYNPSKELVTPVYVNPRDEIFGGRFLQRERVYSEIPISYLDDAICRQGESYGITDSPHGIPHAFSDPQLLDSGVRSGYCSRNGYGQSFSLNLENGQLSSLLIPSVSQVNAMEHQHDSIVHHPQIQSTTPKVESAEAHKRQDLASSPYYESLGMNDLIDMDNILTEKNNLIAQTDLSIPSYDAKDVLENSMKLERMKLIEQNNSVHKDTKVHQGESTVIDKGFVTELHLLDSFPANSLNANTNMQKNRELPFEGIVPAPSDTMGVSLNNIGEKTVFDSLAGEQGFDFSLPRNFDLNAPILNSEVGSCDRSSRGDHRFKLSIHPDSLKAAEIHLSNNQMHIGFQENPTVGSGNLYHAAFCDDLGPSLNMPMNGLDNASNIMPFKKAPSFFDDFIIDTGKMVDQFIPKHSASGMSNVDDKISEQPKVLEGCTDANQVESFTVANMTRVVHSYSSGDIGSEVVSPSHTEAGSIIPESEPEDFSEDKNEFLSDAMMAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGTGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPTVPDRCDSEWRKLMEECWSPEPENRPSFTEITSRLRSMSVVLQPKGNGQAYQLRPS 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01975 1260 Gene3D Transferase(Phosphotransferase) domain 1 1064 1254 - -
Phco3g01975 1260 Gene3D - 205 287 - -
Phco3g01975 1260 ProSiteProfiles Protein kinase domain profile. 976 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01975 1260 ProSitePatterns Protein kinases ATP-binding region signature. 982 1007 IPR017441 GO:0005524
Phco3g01975 1260 CDD STKc_MAP3K-like 982 1239 - -
Phco3g01975 1260 Pfam Protein tyrosine and serine/threonine kinase 979 1239 IPR001245 GO:0004672|GO:0006468
Phco3g01975 1260 SMART serkin_6 976 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01975 1260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1101 1113 IPR008271 GO:0004672|GO:0006468
Phco3g01975 1260 SMART PB1_new 201 288 IPR000270 GO:0005515
Phco3g01975 1260 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 969 1063 - -
Phco3g01975 1260 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 206 288 - -
Phco3g01975 1260 Gene3D Phosphorylase Kinase; domain 1 969 1063 - -
Phco3g01975 1260 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1064 1255 - -
Phco3g01975 1260 CDD PB1_UP2 190 285 - -
Phco3g01975 1260 PANTHER SERINE-THREONINE PROTEIN KINASE 231 1241 - -
Phco3g01975 1260 MobiDBLite consensus disorder prediction 1 37 - -
Phco3g01975 1260 Pfam PB1 domain 203 287 IPR000270 GO:0005515
Phco3g01975 1260 SUPERFAMILY Protein kinase-like (PK-like) 963 1238 IPR011009 -
Phco3g01975 1260 PRINTS Tyrosine kinase catalytic domain signature 1095 1113 IPR001245 GO:0004672|GO:0006468
Phco3g01975 1260 PRINTS Tyrosine kinase catalytic domain signature 1058 1071 IPR001245 GO:0004672|GO:0006468
Phco3g01975 1260 PRINTS Tyrosine kinase catalytic domain signature 1210 1232 IPR001245 GO:0004672|GO:0006468
Phco3g01975 1260 PRINTS Tyrosine kinase catalytic domain signature 1166 1188 IPR001245 GO:0004672|GO:0006468
Phco3g01975 1260 SUPERFAMILY CAD & PB1 domains 202 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01975 Phco-Chr3 44697462 44712858 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Phco3g01975 PK_Tyr_Ser-Thr 3.2e-62 CL0016