Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01961 ATGAGTTGCTTTTCATGTTTTTCATCCAATAAAGTGCCAAAAAGTTCTAACGGAAAGAAGATACAACAGCCTGCTGCTCATTCTCCCAAAGAATCAACCCAAGCAACTCAGCCACGACCAGATAACAAGGCAAACACAAACCCCCAAACAGAACCTAAAATAAACAAGGAGGTCAATAAAGATAATAAGAACAACAATATTGCTGCTCAAACTTTCACCTACAGGGAATTGGCTAATATCACAAAGAACTTCAGGCAGGAATGCCTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAGACTTGAGAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTACAAGGGAATAGAGAGTTTCTTGTTGAAGTTTTAATGTTGAGTCTTTTGCACCATAAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGATTGTTGGTATATGAGTACATGCCATTGGGATCCTTAGAGGACCATCTTCTTGATCTTGGTCCACGACAAAAGCCTCTAGAATGGTTCAATAGAATAAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATACTTGCATGACAAGGCGAATCCTCCAGTCATCTACCGTGACTTGAAATCGTCAAACATCTTATTGGACAAAAACTTCAATGCAAAACTCTCTGATTTTGGATTAGCAAAGTTGGGTCCTACAGGGGACAAATCTCATGTATCTTCAAGAGTAATGGGTACTTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTAACAGTAAAATCTGATGTATACAGCTATGGAGTTGTTTTGCTTGAATTGATCACTGGAAGGAGAGTCATTGATAACTCAAGACCAGGACGGGAGCAAAATCTCATTAATTGGGCATCTCCAATTTTGAAGGACCCTAATAGATACTCAGAATTAGCAGACCCACTTCTTGGAGGAAACTTCCCAATGAGAGCCTTGCATCAAGCATTGGCAGTAGCAGCCATGTGTTTGAATGGTGAGCCATCAGTGAGACCCTTTATCAGTGATGTTGTGACTGCTCTTAGTTTCCTTGGGACATTCACACGGAGTCAAGACCTCTCAGGAACTGTTCACATTCCCACCCCATCACTAGACCAAGAAGCCATCGATGCCCCTCTCAGTCTTCTTCATCATGATATCACTGCCATTGAACGCCAAAGGGCAGTTGCTGAAGCCATCGAATGGGGCACAAATTCTAGGAACAAAGCACCACAGCGTCAAACTTCTCCCTCATTGTAA 1290 0.4147 MSCFSCFSSNKVPKSSNGKKIQQPAAHSPKESTQATQPRPDNKANTNPQTEPKINKEVNKDNKNNNIAAQTFTYRELANITKNFRQECLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLGPRQKPLEWFNRIKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKNFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSYGVVLLELITGRRVIDNSRPGREQNLINWASPILKDPNRYSELADPLLGGNFPMRALHQALAVAAMCLNGEPSVRPFISDVVTALSFLGTFTRSQDLSGTVHIPTPSLDQEAIDAPLSLLHHDITAIERQRAVAEAIEWGTNSRNKAPQRQTSPSL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01961 429 PANTHER OS07G0668900 PROTEIN 3 366 - -
Phco3g01961 429 MobiDBLite consensus disorder prediction 1 53 - -
Phco3g01961 429 Gene3D Transferase(Phosphotransferase) domain 1 161 370 - -
Phco3g01961 429 Pfam Protein kinase domain 86 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01961 429 FunFam Serine/threonine-protein kinase PBS1 56 160 - -
Phco3g01961 429 SUPERFAMILY Protein kinase-like (PK-like) 70 376 IPR011009 -
Phco3g01961 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Phco3g01961 429 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Phco3g01961 429 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01961 429 Gene3D Phosphorylase Kinase; domain 1 54 160 - -
Phco3g01961 429 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01961 429 MobiDBLite consensus disorder prediction 1 62 - -
Phco3g01961 429 CDD STKc_IRAK 90 358 - -
Phco3g01961 429 FunFam Serine/threonine-protein kinase PBS1 161 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01961 Phco-Chr3 44490352 44492413 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco3g01961 Pkinase 1.6e-48 CL0016