Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01960 ATGAACATGGCTTCCTCAATCTTACTATTTTTTTTCCTACCATTCTTGTCTCTGCACACTTCACATGCTGCATCTTCATCACTCACCATGGGCTCATTCCTCTCGGTAGAGAAACCTCAAGACGTTATTCTCTCCCCAAACGGCGTTTTCTCCGCTCGCTTCGTTGCCATTGGTACAAACGCCTACTCCTTCGCCATATGCTACACACAAACTCGTTCCCACAACCACCCCACAATCGTGTGGATGGCGAACCGCGAAGACCCCGTTAACGGAAAACGCTCCAAGCTCTCCCTCTCACCAACCGGTAACCTTGTCTTGGATGATGCTGCTCAACGAACGGTGTGGTCTTCAAACACTGATTCAATGGCTTCACCAGTGTTGCATCTCAAAGATAATGGCAATCTCGTGTTGAGTGACCTCCAAGGAACCATTCTGTGGCAAAGCTTTGATTTCCCCACCGATACTCTCCTTCCAGGACAACCCCTCACGAGACACACGCAACTCGTGTCTGCAAGAAGCAACACTAACCATTCCTCCGGTTTCTACAAGCTCTTCTTCGACGATGACAACGTTCTTCGTCTTCTCTACGATGGCCCTGATGTTTCCAGCATTTACTGGCCAAGTCCATGGTTGGTGAGTTGGGACGCTGGAAGGACTTCTTTCAATAGCAGTAGACTCGCGGCGTTGGACTCACTCGGAAGATTCATGTCATCTGATGGTTTTTCTTTCACCACATCTGATTATGGCGGTATGAAGCAGAGAAGATTGAAACTTGATTCTGATGGTAACCTTAGAGTGTATACACTGCATGATGAATGGTTTGTTTCGTGGCAAGTGAGAGCTGATCTGTGCAATATCCACGGGATTTGTGGAGGTAACAGTGCGTGCAGTTATGATCATAAACTTGGAAGGAAGTGCTCATGTCTTCCGGGATATAGAGTGAAGAACCATAGAGATTGTTCTTATGGCTGTGAACCTGTGTTCGTTTTGTCTTGCAATAGAAGTGAGTCTACCTTCTTGGAGTTGACGGGTGTTGAGATTTATGGTTATGATGCTAACTTTTCTGAACCTAATAGCTATAGCAATTGTATGAATCTTTGCTTAGAAGACTGTAACTGTAAGGGGTTTCAGTACTCATACAATCCTGTCAAGAACGTTTACACGTGCTACACCAAGATGCAACTGCTCAATGGGCGGCGTACACCGAGTTTCAAAGGAACAATGTCCTTGAAAGTGCCTAAAAATCATAGCCTTTTCACGGAAGAATCTTTTGGTTCAAATGAGCATGTTTGTACAGTTCAAATTCCCAGAGTGTACATAGAATATCATGTAAGCAAGATTGTGAGGTTTTTTCTCTGGATGGCCACTGCCATTGGTGCTCTTGAATTGGTTTGCGTTTTTGTCGTGTGGGGCTTCATAGTTAAGACGCGCCAAAAGTCTTATGCAGATGAACACGATTACCATCCTCTGACCGATAGATTCAGAAAATATAGTTATTCTGAGTTGAAGGAGGCGACGAAGGGGTTCAGCGAGGAGATTGGAAGGGGTGCCGGAGGGATTGTGTACAAAGGTATTTTACCAGATCAAAGACATGCAGCAATTAAGAAACTGAATGAAGCTAAACAAGGAGAAGGGGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAAGGGTTCGTTGGCAGAAAATCTCTCATCCAACACACTCGATTGGAGTAAGAGATACAACATTGCCATTGGAACAGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTAGAATGGATATTGCACTGTGATATAAAGCCCCAGAACATACTTCTTGATGCTAATTATCAACCCAAGGTAGCAGATTTTGGGCTGTCCAAGCTGCAAAACAGGAACAGCCTGAACAATTCAAGTTTTTCAATGATAAGAGGAACCAGAGGATACATGGCACCTGAGTGGGTTCTGAACTTAGCAATCACCTCCAAGGTTGATGTTTACAGCTATGGAATTGTTCTCTTGGAGATGATAACTGGGAAGAGCCCAACAATGGGTGTTCAAAACATTGATGGAGAAGAGTGGTACAATGGAGGGGTGGTGGCATGGGTGAGAGAAAAAAGGAAAGGGAGATCTTGGCTAGACCATATCATTGATCCTGCAATCCAAACAAATTATGATGAATCTAAGATGGAGCTTTTAACCAAAGTGGCTTTGGACTGTGTTGAGGAAGACAAAGATATAAGGCCAACCATGAGCCAAGTGGTAGAAATGCTTCGAAGTGTTCCTCACTGA 2358 0.4423 MNMASSILLFFFLPFLSLHTSHAASSSLTMGSFLSVEKPQDVILSPNGVFSARFVAIGTNAYSFAICYTQTRSHNHPTIVWMANREDPVNGKRSKLSLSPTGNLVLDDAAQRTVWSSNTDSMASPVLHLKDNGNLVLSDLQGTILWQSFDFPTDTLLPGQPLTRHTQLVSARSNTNHSSGFYKLFFDDDNVLRLLYDGPDVSSIYWPSPWLVSWDAGRTSFNSSRLAALDSLGRFMSSDGFSFTTSDYGGMKQRRLKLDSDGNLRVYTLHDEWFVSWQVRADLCNIHGICGGNSACSYDHKLGRKCSCLPGYRVKNHRDCSYGCEPVFVLSCNRSESTFLELTGVEIYGYDANFSEPNSYSNCMNLCLEDCNCKGFQYSYNPVKNVYTCYTKMQLLNGRRTPSFKGTMSLKVPKNHSLFTEESFGSNEHVCTVQIPRVYIEYHVSKIVRFFLWMATAIGALELVCVFVVWGFIVKTRQKSYADEHDYHPLTDRFRKYSYSELKEATKGFSEEIGRGAGGIVYKGILPDQRHAAIKKLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEKGSLAENLSSNTLDWSKRYNIAIGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLQNRNSLNNSSFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPTMGVQNIDGEEWYNGGVVAWVREKRKGRSWLDHIIDPAIQTNYDESKMELLTKVALDCVEEDKDIRPTMSQVVEMLRSVPH 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01960 785 FunFam Putative receptor-like protein kinase 582 785 - -
Phco3g01960 785 Pfam D-mannose binding lectin 78 167 IPR001480 -
Phco3g01960 785 CDD STKc_IRAK 513 780 - -
Phco3g01960 785 SMART blect_4 34 152 IPR001480 -
Phco3g01960 785 Gene3D - 20 151 IPR036426 -
Phco3g01960 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 209 IPR036426 -
Phco3g01960 785 CDD PAN_AP_plant 328 413 - -
Phco3g01960 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Phco3g01960 785 ProSiteProfiles Bulb-type lectin domain profile. 40 150 IPR001480 -
Phco3g01960 785 Gene3D - 153 282 IPR036426 -
Phco3g01960 785 Gene3D Transferase(Phosphotransferase) domain 1 582 785 - -
Phco3g01960 785 Gene3D Phosphorylase Kinase; domain 1 472 581 - -
Phco3g01960 785 SMART serkin_6 507 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01960 785 ProSitePatterns Protein kinases ATP-binding region signature. 513 536 IPR017441 GO:0005524
Phco3g01960 785 Pfam S-locus glycoprotein domain 242 315 IPR000858 GO:0048544
Phco3g01960 785 PIRSF SRK 1 785 IPR024171 GO:0004674
Phco3g01960 785 ProSitePatterns EGF-like domain signature 2. 306 320 IPR000742 -
Phco3g01960 785 CDD B_lectin 43 152 IPR001480 -
Phco3g01960 785 Pfam Protein kinase domain 510 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01960 785 PANTHER OS07G0415500 PROTEIN 4 782 - -
Phco3g01960 785 ProSiteProfiles PAN/Apple domain profile. 332 423 IPR003609 -
Phco3g01960 785 FunFam S-receptor-like serine/threonine-protein kinase 475 581 - -
Phco3g01960 785 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01960 785 SUPERFAMILY Protein kinase-like (PK-like) 484 780 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01960 Phco-Chr3 44416223 44418580 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco3g01960 Pkinase 6.3e-52 CL0016