Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01956 ATGACTTTGTCAGCCACATTCTTTCTTCTAGCATCGTTATTGTCCTTCCAACATTCACGTTCTTCATCATCATTGAGAATGGGTTCTTCCCTCTCTGTGGAAAATCCACAACATATTCTCATCTCACCAAATGCTGTCTTCTCTGCTGGCTTCTTAGCCATTGGCCACAACGCATATTCATTTGCAATATGGTTCACGGAGCCTCATTTTCACAGCCCTAACACTGTCACATGGATGCCAAACCGTGACCAACCTGTGAATGGAAAACGCTCCAAACTTTCCCTCACACACGATGGCAACATACTCTTGATTGATGCTTCTCTTAACACCGCTTGGTCTTCAAACACCGATTCATTAGACCCAGTAGAGTTGCATCTCAAAGATGATGGCAATCTAGTGTTACGCCAGCTTCAGGGAACCGTTCTGTGGCAAAGTTTCGATTTTCCAACCGACACGCTCGTTCCTGGCCAGCCTCTTACCAGATACACACAACTGGTGTCTTCAAGAAGCCACACTAACCATTCATCTGGTTTCTACAAGCTGTTTTTCGGCGATGATAACATTCTTCGTCTTGTATATGATGGCCCTGATGTTTCCAGCAATTACTGGCCAAGTCCCTGGCGAGTAAGTTGGGATGTTGGTAGAACTTTATTCAATAGCTCTAGAATTGCTGTGCTGAATTCTTTTGGGGTCTTTCATTCCTCAGATAACTTCACTTCTGCGACATCAGATTATGGCACCGAGCTGCAGAGAAGGTTGAAATTGGATTCTGATGGTAATTTCCGAGTGTATAGTCGAAAGAGTGTGTCAGAGAAATGGTATGTTTCGTGGCAAGCAATTACTAATGGTTGCTTGATTCATGGGGTTTGTGGAGCCAACAGCACGTGTGGTTATGATAGTAAGAGTGGGAAAAAGTGTAAGTGTCTTCCAGGGTACAGATTGAACAACCAGAGTGATTGGTCTCATGGGTGCAAACCCATGTTTGATCTCACCTGCAATAGGAATGAGTCTACCTTCTTGGAGATGCGGGGTGTTGAATTTTACGGGTATGATAATTATTATATACAAGTTAGTAACTTCAGTGCCTGTAAAAATTTGTGCTTGCAAAATTGCAGTTGTCAGGGGTTTCAGTACTCCTATAGCGATAAAACGGGCTTTACCTTCAAGTGTTATACCAAAACGAAATTGCTCAATGGAAGGCGTTCACCCAGATTCCCAGGAGCAACATACTTGAGAGTGTCCAAAAGTTATAGCTTCTCCGGCGAAGAATCTGCTAATGACACTGGACATGATCATCGAGTTTGTTCAGTTCAACTTCAAAGAGATTACATAAAAACATCTGGAAGCCGTATTGTGAGTGTTTTTATGTGGTTTGCTACCGCACTTGGAGCTTTTGAAATGGTTTGCGTTTTTGTGATTTGGTGCTTCCTAATTAGGACCAGCCAAAAGTCTGATGCAGATCAAAAGGGCTACCATCTTACAGCAACAGGATTCAGAAAATTTAGCTACTCCGAGCTGAAAAAGGCTACAAAGGGGTTCAGTCAAGAGATTGGAAGAGGTGGGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATCAAAGACATGCAGCAATTAAGAGACTTTATAATGCCAAACAAGGAGAAGGGGAGTTTCTTGCTGAAGTAGGCATCATTGGAAAGCTTAACCACAAGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAACATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAATCTCTCAACTAACAAACTTGATTGGAGTAAGAGATATAACATTGCAATTGGAACAGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAACCACAAAATATACTTCTAGATTCTAATTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCTAAGCTCCACAACAGAAATAACCCCAACAATCCAAGCATCTCTATGATCAGAGGGACCAGAGGCTACATGGCACCTGAGTGGGTTCTTAACTTGCCTATCACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAGAAGCACAACAAGTGTGCAAGAAATTAATGGTGGAGAGACATATGATGGAAGGCTAGTGGCATGGGTGAGAGAAAAAAGAAGCAACACCAACTCATCTTGGGTGGAACAAATAATTGAACCTGCTATTGGACCTGATTATGATATAAGTAAGATGGAAATGTTGACTACAGTGGCTTTGAACTGTGTAAATGAAGACAGAGATTCAAGGCCAAGCATGAGCCAAGTAGTTGAGATGCTTCAAGGTCATGGAAATGATCCTTATTTATGA 2385 0.4189 MTLSATFFLLASLLSFQHSRSSSSLRMGSSLSVENPQHILISPNAVFSAGFLAIGHNAYSFAIWFTEPHFHSPNTVTWMPNRDQPVNGKRSKLSLTHDGNILLIDASLNTAWSSNTDSLDPVELHLKDDGNLVLRQLQGTVLWQSFDFPTDTLVPGQPLTRYTQLVSSRSHTNHSSGFYKLFFGDDNILRLVYDGPDVSSNYWPSPWRVSWDVGRTLFNSSRIAVLNSFGVFHSSDNFTSATSDYGTELQRRLKLDSDGNFRVYSRKSVSEKWYVSWQAITNGCLIHGVCGANSTCGYDSKSGKKCKCLPGYRLNNQSDWSHGCKPMFDLTCNRNESTFLEMRGVEFYGYDNYYIQVSNFSACKNLCLQNCSCQGFQYSYSDKTGFTFKCYTKTKLLNGRRSPRFPGATYLRVSKSYSFSGEESANDTGHDHRVCSVQLQRDYIKTSGSRIVSVFMWFATALGAFEMVCVFVIWCFLIRTSQKSDADQKGYHLTATGFRKFSYSELKKATKGFSQEIGRGGGGVVYKGILSDQRHAAIKRLYNAKQGEGEFLAEVGIIGKLNHKNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSTNKLDWSKRYNIAIGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLHNRNNPNNPSISMIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMVTGRSTTSVQEINGGETYDGRLVAWVREKRSNTNSSWVEQIIEPAIGPDYDISKMEMLTTVALNCVNEDRDSRPSMSQVVEMLQGHGNDPYL 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01956 794 FunFam Putative receptor protein kinase ZmPK1 19 148 - -
Phco3g01956 794 Pfam S-locus glycoprotein domain 246 314 IPR000858 GO:0048544
Phco3g01956 794 ProSiteProfiles Bulb-type lectin domain profile. 16 147 IPR001480 -
Phco3g01956 794 SMART blect_4 30 149 IPR001480 -
Phco3g01956 794 PIRSF SRK 1 793 IPR024171 GO:0004674
Phco3g01956 794 Gene3D - 18 147 IPR036426 -
Phco3g01956 794 ProSiteProfiles PAN/Apple domain profile. 332 414 IPR003609 -
Phco3g01956 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Phco3g01956 794 Gene3D Phosphorylase Kinase; domain 1 477 585 - -
Phco3g01956 794 CDD STKc_IRAK 517 787 - -
Phco3g01956 794 Gene3D Hepatocyte Growth Factor 341 411 - -
Phco3g01956 794 CDD B_lectin 40 149 IPR001480 -
Phco3g01956 794 FunFam S-receptor-like serine/threonine-protein kinase 480 585 - -
Phco3g01956 794 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Phco3g01956 794 CDD PAN_AP_plant 328 414 - -
Phco3g01956 794 FunFam Putative receptor-like protein kinase 586 791 - -
Phco3g01956 794 Gene3D Transferase(Phosphotransferase) domain 1 586 791 - -
Phco3g01956 794 SMART serkin_6 511 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01956 794 Pfam Protein kinase domain 514 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01956 794 Pfam PAN-like domain 332 395 IPR003609 -
Phco3g01956 794 SUPERFAMILY Protein kinase-like (PK-like) 491 786 IPR011009 -
Phco3g01956 794 ProSiteProfiles Protein kinase domain profile. 511 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01956 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 167 IPR036426 -
Phco3g01956 794 PANTHER OS07G0415500 PROTEIN 4 790 - -
Phco3g01956 794 Pfam D-mannose binding lectin 75 162 IPR001480 -
Phco3g01956 794 CDD EGF 284 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01956 Phco-Chr3 44320179 44322563 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco3g01956 Pkinase 1e-52 CL0016