Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01955 ATGGCTTTGTCGATCACACTCTTTCTTCTAGCATCAATGCATTTCCAAGGTTCATCTTCTTCATCATCGTTGAGAATGGGTTCTTCCCTCTCTGTGGAAAATCCACAACATATTCTCATCTCACCAAATGCTATCTTCTCTGCTGGTTTTGTTTCCATTGGTGAGAACGCATATTCATTTGCAATATGGTTCACGGAGCCTCGTTTTCACAGCCCTAACACTGTCACATGGATGGCAAACCGTGACCAACCTGTGAATGGAAAACGCTCCAAACTTTCCCTCACAGACGATGGCAACATAGTCTTGATTGATGCTTCTCTTATCACTGCTTGGTCTTCAAACACCGATTCATTAGACCCAGTAGAGTTGCATCTCAAAGATGATGGAAATCTTGTGTTACACCAGCTTCAAGGAACGGTTCTATGGCAAAGTTTTGATTTTCCCACCGATACTCTTGTTCCTGGTCAACCTCTTACCAGATACACACAACTTGTGTCTTCAAGAAGCGAGAGTAACCATTCCTCAGGTTTCTATACGTTTTCATTCGATGATAGCAACGTTCTTGGTCTTCATTATGATGGTCCAGATGTTTCAAGCTCCTACTGGCCACAACCTTGGTTGATAAGTTGGGATGCTGGAAGGACTAATTTCAACAGTAGTAGAATTGGCGTGATGAACTTTCTTGGGCTTTTCAATTCAACCGATAATTTCACTTTCGTGACATCTGATTATGGCACAGTGCTGCAGAGAAGGTTGAAAGTGGATTGTGATGGAAATGTTCGAGTGTATAGTCGAAAGAGTGTTTTGCAAAAGTGGTATGTTTCATGGCAAGCAATTTCTAGTGGTTGCACACCTCATGGGATTTGTGGACCCAACAGCTTCTGTGTTTATGTTCATGCGAGTGGAAGAAAATGTTTGTGTCTTCCGGGGCATAGATTGAAGAACCACAGTGACTGGTCTCAAGGGTGTGAACCCTTGTTTCAGCTTACTTGCCATGGGAATGAGTCTATGTTCTTGGAGATTCCAAATGTTGAGTTCTATGGCTATGACAATCATTATGTAGAAGTTAGTAACTATAGTGCCTGCGAGAATTTATGCTTGCAAGACTGCAATTGTAAGGGGTTTCAGCACTCCTATACTGATGATAAACGCTTTTATAGGTGCTATACAAAAACACAATTGCTCAATGGAAAACGTTCACCGGTATTCCAAGGAACAACATACTTGAGATTGCCCAAAAGCAATAGCTTCTCTCACAAACAATATGCCAGTGAACCTTTATATGATCATGTTTGTTCTGTTCAACTTCAACGAGCTTATATCAAAACACATGCAAACCGTTTTGTAAAGATTTTCCTATGGTTTTCTACAGCTCTTGGAGCTTTTGAAGTGATTTGCGCTTTTGCGATTTGGCGTCTACTAGTTTGGACCAGACAAAAGTCTAACGTTGATCGAGAGGGCTACCATCTTACAGAAACAGGATTCAGAAAGTTTAGCTTCTCTGAGCTGAAAAAGGCTACAAAGGGTTTCAGTGAAGAGATAGGAAGAGGTGGGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATCAAAGACATGCAGCAATTAAGAGACTTTATAATGCTAAACAAGGAGAAGGGGAGTTTCTTGCTGAAGTAGGCATCATTGGAAAGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAACATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTAGCAGAAAATCTCTCATCCAACACTCTTGATTGGAGGAAGAAATACAACATAGCTCTTGGAACAGCAAGAGTTTTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTCTGCACTGTGATATAAAGCCACAAAATATACTTCTAGATTCTAACTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCTAAGCTCCTGAACAGAAATAACCCCAACAATCCAAGCATCTCTATGATCAGAGGGACCAGAGGCTACATGGCACCTGAGTGGGTTTTTAACTTGCCCATCACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAAGAGCACAACAAGAAGTATTCATAATGGTGAAGAAAGATATGATGGGAGGGTGGTGGAATGGGTGAGAGAGAAAAGGGAGAACAGTAGCTCATGTTGGTTGAAGGAGATAATTGAAGCTGATATTGGAGGTGATTATGATGATAGGAAGATGGAAATTTTGAGTAAAGTAGCTTTGAAGTGTGTGATGGAAGACAGAGATTCAAGGCCCACCATGAGCCAAGTAGTTGAGATGCTTCAGTGA 2349 0.4117 MALSITLFLLASMHFQGSSSSSSLRMGSSLSVENPQHILISPNAIFSAGFVSIGENAYSFAIWFTEPRFHSPNTVTWMANRDQPVNGKRSKLSLTDDGNIVLIDASLITAWSSNTDSLDPVELHLKDDGNLVLHQLQGTVLWQSFDFPTDTLVPGQPLTRYTQLVSSRSESNHSSGFYTFSFDDSNVLGLHYDGPDVSSSYWPQPWLISWDAGRTNFNSSRIGVMNFLGLFNSTDNFTFVTSDYGTVLQRRLKVDCDGNVRVYSRKSVLQKWYVSWQAISSGCTPHGICGPNSFCVYVHASGRKCLCLPGHRLKNHSDWSQGCEPLFQLTCHGNESMFLEIPNVEFYGYDNHYVEVSNYSACENLCLQDCNCKGFQHSYTDDKRFYRCYTKTQLLNGKRSPVFQGTTYLRLPKSNSFSHKQYASEPLYDHVCSVQLQRAYIKTHANRFVKIFLWFSTALGAFEVICAFAIWRLLVWTRQKSNVDREGYHLTETGFRKFSFSELKKATKGFSEEIGRGGGGVVYKGILSDQRHAAIKRLYNAKQGEGEFLAEVGIIGKLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSNTLDWRKKYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSTTRSIHNGEERYDGRVVEWVREKRENSSSCWLKEIIEADIGGDYDDRKMEILSKVALKCVMEDRDSRPTMSQVVEMLQ 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01955 782 Pfam D-mannose binding lectin 74 160 IPR001480 -
Phco3g01955 782 ProSiteProfiles Protein kinase domain profile. 508 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01955 782 Pfam S-locus glycoprotein domain 221 314 IPR000858 GO:0048544
Phco3g01955 782 PIRSF SRK 1 782 IPR024171 GO:0004674
Phco3g01955 782 SMART serkin_6 508 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01955 782 CDD STKc_IRAK 514 782 - -
Phco3g01955 782 FunFam Putative receptor protein kinase ZmPK1 18 147 - -
Phco3g01955 782 FunFam Serine/threonine-protein kinase 583 782 - -
Phco3g01955 782 Pfam Protein kinase domain 511 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01955 782 Gene3D Transferase(Phosphotransferase) domain 1 583 782 - -
Phco3g01955 782 FunFam S-receptor-like serine/threonine-protein kinase 477 582 - -
Phco3g01955 782 CDD B_lectin 39 148 IPR001480 -
Phco3g01955 782 SMART blect_4 29 148 IPR001480 -
Phco3g01955 782 PANTHER OS07G0415500 PROTEIN 5 782 - -
Phco3g01955 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Phco3g01955 782 ProSitePatterns Protein kinases ATP-binding region signature. 514 536 IPR017441 GO:0005524
Phco3g01955 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 164 IPR036426 -
Phco3g01955 782 Gene3D Phosphorylase Kinase; domain 1 474 582 - -
Phco3g01955 782 Pfam PAN-like domain 331 393 IPR003609 -
Phco3g01955 782 ProSiteProfiles Bulb-type lectin domain profile. 15 146 IPR001480 -
Phco3g01955 782 Gene3D Hepatocyte Growth Factor 338 420 - -
Phco3g01955 782 SUPERFAMILY Protein kinase-like (PK-like) 486 781 IPR011009 -
Phco3g01955 782 Gene3D - 17 146 IPR036426 -
Phco3g01955 782 ProSiteProfiles PAN/Apple domain profile. 331 407 IPR003609 -
Phco3g01955 782 CDD PAN_AP_plant 327 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01955 Phco-Chr3 44307842 44310190 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco3g01955 Pkinase 4.4e-53 CL0016