Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01948 ATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTACATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAAGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATCTTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCGGCTTACATTGAGACACAGCAAACAAAAGCTAAAGAACAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAACGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACACTGAAGGAATGTTGGGGCAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAGGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATGGATGCTAATAGGATGGCCTTACTCAAGTCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCAGCAAATTCCTGGGCGAACTCCTTTGAACACTGACATCAAAGCAGAAGTTAATTTAGGTGCCCCTTCAAAGAGTTTGCCTATGGATACATCAGTTTATCGGCAAGCAATTTTACAATCAAAGTCAGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAGCCCAGAACCAATTTGTTATGTCATCGCAACAGCAACAGGTCTTGACACAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAGCAGAAATGATGGGTCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGATGAAGATGGCTCAGTCACAACATTCATTATCTCAACAGCAGGAACAATTACAGCAGCATCAACTGCAGCAGAGTAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATACAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCAAATCTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTTGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCGGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAATTTGGTAGCATTAGATCAAGGAACAGCAAGGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGTGATGACATGAAGGTTGTCTTCTGGAGCATGGACACTTTACAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTTTAGACCAAATTCACTTCAGTTGGCAACTGCCTCAATGGATAAATCTGTGCGGTTATGGGACACAACCAATCCTACCCGTTGTGTACAAGAATATAGTGGGCACTCTTCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGTTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAATTCGCCCAACTGCTCCCGTGTAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGATTGGGGCAGTACCTAGCAGCACCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAGCTGACACAAAAATCTTCTCCCTGCTGGGTCATCCTGAACCAGTGAACTATATTTGCTGGGATGGGAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCTTTCAGGAGATCACCTCCACTGGAAGCCAATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATATTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATCCTTGCACATGAAAATGTAATATCTTGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCCTCTGCAAGTTTTGACAACTATGTAAAGCTGTGGAAATAA 2331 0.4234 MAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAKEQQLQMQQMQLMQQRNAQLQRRDPNHPALGSSINAMNTEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLMDANRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLNTDIKAEVNLGAPSKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTAQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLNAKDGQSSRNDGSICSQMQSDSPKMKMAQSQHSLSQQQEQLQQHQLQQSNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNIQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEFGSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWSMDTLQTENSPAEHKAVITDVRFRPNSLQLATASMDKSVRLWDTTNPTRCVQEYSGHSSAIMSLDFHPKKTELFCFCDGENEIRYWNINSPNCSRVTKGGNTQVRFQPRLGQYLAAPSDKGVSIFDVEADTKIFSLLGHPEPVNYICWDGNGEALASVSLNMVKIWSLNSGECFQEITSTGSQFHSCVFHPSYSTLLVIGGYSCLELWNMSENKSMTILAHENVISCMAQSSVTGMVASASFDNYVKLWK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Phco3g01948 776 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 776 IPR044716 GO:0003714
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Phco3g01948 776 Coils Coil 81 111 - -
Phco3g01948 776 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515
Phco3g01948 776 Pfam WD domain, G-beta repeat 500 527 IPR001680 GO:0005515
Phco3g01948 776 Pfam WD domain, G-beta repeat 539 569 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 655 693 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 530 569 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 696 735 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 573 613 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 488 527 IPR001680 GO:0005515
Phco3g01948 776 SMART WD40_4 737 776 IPR001680 GO:0005515
Phco3g01948 776 Gene3D - 472 627 IPR015943 GO:0005515
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Phco3g01948 776 SUPERFAMILY WD40 repeat-like 492 776 IPR036322 GO:0005515
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 744 776 - -
Phco3g01948 776 MobiDBLite consensus disorder prediction 296 408 - -
Phco3g01948 776 Pfam LisH 12 37 IPR006594 GO:0005515
Phco3g01948 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 744 776 IPR001680 GO:0005515
Phco3g01948 776 Coils Coil 345 365 - -
Phco3g01948 776 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Phco3g01948 776 SMART Lish 10 42 IPR006594 GO:0005515
Phco3g01948 776 MobiDBLite consensus disorder prediction 318 408 - -
Phco3g01948 776 Gene3D - 628 776 IPR015943 GO:0005515
Phco3g01948 776 CDD WD40 493 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01948 Phco-Chr3 44182775 44190328 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phco3g01948 WD40 0.034 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01948 3 44182775 44190328 Phco3g01948 3 44182775 44190328 ECH