Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01935 ATGTCTCTTCCAATAGAGACTAAGGTAAACACCAACAACAACACTCCTTTTCCACACTTGAAGATCAAAGAAGGAGAAACACCCTCCTCTTCCAGACCTCCCTCTTCTTCACACGTCTCTTTCCCTCCCATACCTACTACTACTAAGAAACTCCAAATTGAAGATAGCGATGAAGATGTGTTCACGGTTCCAGATGTGGAAGCTGCACTAAGTGTTGATTCTGCAACAACAAATCCATGTAGCAGTAATGTTAATCAAAGTCACTTGACAGATCCACATATACATTATTCTGGTTTCTCTGGTAAACGTCGCCAGGGAAGAAACCCTCTGGAGAAAGAAGAGCATAGACGGCACAAGAGGTTATTAAGGAACAGGGTTTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACCTAAATGAGTTGGAATCAAGCGCTGTGGAGTTGGAAGAGAAGAATACCAATTTAGAAGAGCAAATTTCAACGTTGATCAATGAAAACACCATGCTAAGAAAGGTTCTTATGAACAAGAGGGCTAAAGTTGACGACAACAATGAAGCGTAG 564 0.4167 MSLPIETKVNTNNNTPFPHLKIKEGETPSSSRPPSSSHVSFPPIPTTTKKLQIEDSDEDVFTVPDVEAALSVDSATTNPCSSNVNQSHLTDPHIHYSGFSGKRRQGRNPLEKEEHRRHKRLLRNRVSAQQARERKKVYLNELESSAVELEEKNTNLEEQISTLINENTMLRKVLMNKRAKVDDNNEA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01935 187 CDD bZIP_HY5-like 117 167 - -
Phco3g01935 187 SUPERFAMILY Leucine zipper domain 116 175 IPR046347 GO:0003700|GO:0006355
Phco3g01935 187 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 27 183 IPR044280 GO:0000981|GO:0045944
Phco3g01935 187 MobiDBLite consensus disorder prediction 74 93 - -
Phco3g01935 187 SMART brlzneu 112 176 IPR004827 GO:0003700|GO:0006355
Phco3g01935 187 MobiDBLite consensus disorder prediction 1 56 - -
Phco3g01935 187 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 114 177 IPR004827 GO:0003700|GO:0006355
Phco3g01935 187 Pfam bZIP transcription factor 113 172 IPR004827 GO:0003700|GO:0006355
Phco3g01935 187 MobiDBLite consensus disorder prediction 28 50 - -
Phco3g01935 187 MobiDBLite consensus disorder prediction 74 117 - -
Phco3g01935 187 MobiDBLite consensus disorder prediction 1 18 - -
Phco3g01935 187 Gene3D Single helix bin 135 176 - -
Phco3g01935 187 Coils Coil 132 173 - -
Phco3g01935 187 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 119 134 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01935 Phco-Chr3 43999732 44011536 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco3g01935 bZIP_1 1.4e-10 CL0018