Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01927 ATGAAAGATGTGATAAACATTTGCATGGCACAAACCGTTGACTTCAAAAGGACACTGTCAAATCTTACAGTGGCCATTTGGTTCATAGTAATGGATTTCAGAATCCGTGCAAACAACATGTTCGTTGTTTTGTTCATACTGTGTTGTTGTGATTTGGATTTTGGTACTGCCACAGACACCATCAACACATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCACTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACCAATCGTTATGTAGGAATTTGGTGGAAAACCAAATTCCCTGTCACATGGGTGGCTAACAGAAACCAACCACTGAGTGATTCTTCTGGAGTTGTCACCATATCTGAAGATGGTAATCTTGTGGTGTTGAATGGTCAGAAACAAGTGATTTGGTCAACAAATGTGTCAACGACATCATCCAATACAAGTGCCCAGCTTTTAGATTCTGGTAAGCTAGTCCTCACTGAAACCACAAGGGGAACCATCTTGTGGGATAGTTTTGAGCACCCTTCAAATACGTTATTGCCCGGTATGAAAACTTCAACCAATGTAAGAACAGGTATGAAAATAGAAATTACATCATGGAAAAGCCCTTCTAATCCCTCCGTTGGGAGCTTCTCTTCCAGTGTTTTTCGACGCATAAATATAATTGAAATGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGAATGGTGGGATCTTTACAGGGATACCCATGTCATCGTTTCTTTATTCTTTCAAAGCTGGGGATGATGAGGAAGGAAATACATATTTCTATTACACAGTACCAAGTCCGCAACAAATTTTTATGTATATGTTGAATTCGCGAGGCCAATATAACCAAATATCGTGGAATGATAAGAAGAAGGAGATGGAAATTACATGGACTAGTCAAGAATCAGATTGTGATGTTTATGGAATATGTGGGTCATTCGCTATTTGTAATGCAGAAAGCTCACCAATATGCAGTTGTTTGAAAGGGTTTGAGCCGAGGAAGAAAGAAGAATGGAATAGACAAAACTGGGCGAGTGGATGTGTTAGGAGCACACCTTTGCAGTGTGAAAGGGTCAGAGATCAAAACGTAAGTGCAAAGGAAGATGGCTTTTCGAAACTGCAAATGGTTAAAGTTCCCGATTTTCCAGAAGGGATTATTGTTGACACTGAATGCAGAAGCCAATGCTTGGAGAATTGCTCTTGTGTTGCTTATTCTTTTGATGTTGGAATCGGTTGCATGTCTTGGACTGGGAATCTTCTAGACATACAACAATTGCCAGAGGGAGGACTTGATTTATATGTTCGTGTAGCTGACTCTGATCTTGAACATGATAAAGGGACAATCACAGCAATGATCATTGGAATTACAGTCTCAGTAGTAACAGTCATCATAGTTACTAGTGCATATGTCATGTGGAGGACTTCCAATCACCCAGCCAAAATATGGCACTCAATCAAATCATCAAGGAAAAGGAACATCACAGCTTTTCAACCATTGAACAAAAAAGGTGAGACACCAGAACATCCAAGCCACAAAGTAATAGAAGAACTGTCACAAGTTAAACTCCAGGAGCTGTTACTATTTGATTTTGAAAGGCTTGCAACAGCCACAAATAACTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGACCCGTGTACAAGGGGAAACTGCCAGATGGACAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGGCAAGGTCAAGAAGAATTCATGAACGAAGTAGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGCTGTATTGAAGGTGACGAAAAGATGTTGATATATGAGTACTTGCCAAATAAAAGCTTGGATGTGTTAATCTTTGACCCATTTAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGGGACTCCAGACTAAGAATCATACACAGAGATTTGAAGACAAGTAATATATTGTTAGATGAAGAACTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATATTTGGAGGGAGTGAAGATCAGGCCAACACTAACAGAGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGCACTAGAGATTGTAAGTGGAAGAAGAAATTCAAGCTTTCATGATGATGAACATGTTCTTAGCCTCTTGGGATTTGCCTGGATGCAGTGGAGGGAAGGAAATATATCTTCTTTAATAGATCCAGAAGTGTATGATCCTAGTCATCATAATAAAGATATTTTAAGGTTCATTCACATAGCACTTCTATGTGTGCAAGAACTTGCTATAGACCGACCCACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGTGGCATTTCTTCCACCTCCAAATCAACCTGCATTCATCCTGAGGCATAATTTGCTAAATTCAGTGTCATCTAAAGGAAGTCATAGATTTTCCTCCACCAATACTGTTAGCATTACAAGTATCAGTGGAAGATAG 2619 0.3982 MKDVINICMAQTVDFKRTLSNLTVAIWFIVMDFRIRANNMFVVLFILCCCDLDFGTATDTINTSQFIKDNETITSTGGNFTLGFFTPQNSTNRYVGIWWKTKFPVTWVANRNQPLSDSSGVVTISEDGNLVVLNGQKQVIWSTNVSTTSSNTSAQLLDSGKLVLTETTRGTILWDSFEHPSNTLLPGMKTSTNVRTGMKIEITSWKSPSNPSVGSFSSSVFRRINIIEMFIWNETRPYWRSGPWNGGIFTGIPMSSFLYSFKAGDDEEGNTYFYYTVPSPQQIFMYMLNSRGQYNQISWNDKKKEMEITWTSQESDCDVYGICGSFAICNAESSPICSCLKGFEPRKKEEWNRQNWASGCVRSTPLQCERVRDQNVSAKEDGFSKLQMVKVPDFPEGIIVDTECRSQCLENCSCVAYSFDVGIGCMSWTGNLLDIQQLPEGGLDLYVRVADSDLEHDKGTITAMIIGITVSVVTVIIVTSAYVMWRTSNHPAKIWHSIKSSRKRNITAFQPLNKKGETPEHPSHKVIEELSQVKLQELLLFDFERLATATNNFHLSNKLGQGGFGPVYKGKLPDGQEIAVKRLSRASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDVLIFDPFKSKLLDWRKRCSIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGSEDQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLALEIVSGRRNSSFHDDEHVLSLLGFAWMQWREGNISSLIDPEVYDPSHHNKDILRFIHIALLCVQELAIDRPTMAAVISMLNSEVAFLPPPNQPAFILRHNLLNSVSSKGSHRFSSTNTVSITSISGR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01927 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 629 833 - -
Phco3g01927 872 ProSiteProfiles Bulb-type lectin domain profile. 58 177 IPR001480 -
Phco3g01927 872 SMART ntp_6 378 449 IPR003609 -
Phco3g01927 872 Pfam Protein tyrosine and serine/threonine kinase 554 823 IPR001245 GO:0004672|GO:0006468
Phco3g01927 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672|GO:0006468
Phco3g01927 872 FunFam receptor-like serine/threonine-protein kinase SD1-8 525 628 - -
Phco3g01927 872 SMART serkin_6 553 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01927 872 SUPERFAMILY alpha-D-mannose-specific plant lectins 96 211 IPR036426 -
Phco3g01927 872 SUPERFAMILY Protein kinase-like (PK-like) 536 825 IPR011009 -
Phco3g01927 872 Pfam S-locus glycoprotein domain 239 346 IPR000858 GO:0048544
Phco3g01927 872 Pfam D-mannose binding lectin 105 206 IPR001480 -
Phco3g01927 872 Gene3D - 54 177 IPR036426 -
Phco3g01927 872 PIRSF SRK 31 872 IPR024171 GO:0004674
Phco3g01927 872 ProSiteProfiles PAN/Apple domain profile. 368 450 IPR003609 -
Phco3g01927 872 CDD STKc_IRAK 559 826 - -
Phco3g01927 872 Pfam PAN-like domain 378 435 IPR003609 -
Phco3g01927 872 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 42 816 - -
Phco3g01927 872 CDD B_lectin 64 180 IPR001480 -
Phco3g01927 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 54 177 - -
Phco3g01927 872 SMART blect_4 64 180 IPR001480 -
Phco3g01927 872 Gene3D Phosphorylase Kinase; domain 1 516 628 - -
Phco3g01927 872 CDD PAN_AP_plant 364 450 - -
Phco3g01927 872 Gene3D Transferase(Phosphotransferase) domain 1 629 830 - -
Phco3g01927 872 ProSiteProfiles Protein kinase domain profile. 553 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01927 Phco-Chr3 43814296 43817558 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco3g01927 PK_Tyr_Ser-Thr 4.6e-45 CL0016