Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01926 ATGCGTTTCAGCAGCCATGCAAACCTGTTCTTCGTTCTATTCGTGCTGTGTTTTCATGTGTTGGACGTTTGTACGGCCATAGACAGCATCACATCATCACAATCCATCAAGGACCCTGAAACTCTAAGGTCCGAAGATGGTAACTTCACTTTGGGGTTCTTCACCCCTCAAAACTCCACAAACCGCTACGTTGGAATTTGGTGGAAGTCTCAGTCTACAGTTGTATGGGTTGCTAACAGAAACCAACCACTGAATGATTCTTCTGGAATTGTTACAATAGCTAAAGATGGTAATCTTGTGGTGCTGAATGGACAGAAGCAAGTCATTTGGTCAACAAATGTGTCCAAAATATTATCCAATACAAGTTCAGAGTTTTCAGACTCTGGTAAGCTAGTACTCATGGAAACCACAACAGGAAATATCTTATGGGATAGTTTTCATCAACCTTCAGATACGCTCTTGCCCAGCATGAAACTTTCAATCAACACAAAAACTAATAAGAAAGTAGAACTTACATCATGGGAAAGCCCTTCGAATCCCTCTATTGGCAGCTTTTCTTCTGGGGTTGTTCAACGCTTTCATATTATTGAAGTGTTCATTTGGAATGAAACTAGACCATACTGGCGCAGTGGTCCATGGAATGGAGGGGTATTTTTAGGGATACCCAACATGTCAACATATCTTAATGGTTTCAAAGGTGGGGATGATGGCGAAGGAAATACAGATATCTATTACACAGTGCCAAGTGAACTAGGATTTGTAATCTATATGTTGAATTCAAAAGGCCAATATGAACAAAAACTGTGGGATGCTGAGAAGAACGAAATGATAATTAGATGGACTAGTAAAGTGTCAGATTGCGATGTTTATGGTATATGTGGACCATTCACAAGCTGTAATGCACAGAGCAAACCGATATGTAGCTGTTTGAAAGGATTTGAGCCGAGGAACAAGGAGGAATGGAATGGAAAAAACTGGACCGGTGGATGTGTTAGGAGAACACCTTTGAAGTGTGAAAGGGTCAAAAATCAAAACACAAGTACAGATGCAAAGAAAGATGGATTTTTGAAACTGCAGATGGTTAAAGTTCCTGATTTTTTAGAAGGGTCTCCTGTTGAGAGTGACATATGCAGAAGCAAATGCTTGGAGAATTGCTCTTGTGTTGCTTATTCTCATGATGATGGGATTGGTTGCATGTCTTGGACTGCGAATCTACTAGACATGCAGCAATTCTCAGAGGGAGGACTTGATCTATATGTTCGTGTAGCCCACTCTGAACTTGATAAAGGAACAAACACAAAAATCATCATTACAACAGCAGCAATAATAGCAATTGTGATCATGATTACAAGTGCATGTGCATGTTTCATGTGGAGGACTTCCAAGCATCCAGCTAAAGTATGGCAGTTAATCAACTCAGTAAGGAAAGGGAACAACAAAGCTTTTGTACAATTTAATAATGAGGGAACACCAGAACATGAAAGCCATAGTGTAATTGAAGAACTGTCACAAGTTAAATTACAGGAGCTGTTACTATTTGATTTCAAAAGGGCTGCAGCAGCCACAGACAACTTCCATCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTATACAAGGGGGAACTGGAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTATACAAGGTCTAGAAGAATTCATGAACGAAATAGTCGTTATTTCCAAGCTTCAACATCGCAATCTTGTAAAACTTTTTGGCTGCTGTGTTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTATTTATCTTTGATCCATCAAAATGTAAACTCCTAGGCTGGAGGAAGCGCAGTAGCATAATAGAAGGAATAGCTCGAGGACTACTTTATCTTCACAGAGACTCCAGACTAAAAATTATACACAGAGATTTGAAGGCAAGTAATATATTGCTAGATGAAGAACTAAATCCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGGTGGGACTCAAGATCAAGTCAATACTAGAAGAGTTGTTGGAACCTATGGCTACATGTCTCCTGAATATGCAATGGAAGGACTATTTTCAGAAAAATCAGATGTGTTTAGCTTTGGTGTTTTGGTTCTAGAGATTGTTAGTGGAAGAAGAAACTCAAGCTCTTATGGCAATGTGCATGCTCTTAGCCTTTTAGGATTTGCCTGGATACAATGGAAGGAAGGAAATGCATTATCTTTAATAGATCCAGAAATATATGATCCTAGTCATCATCAAGATATCTTAAGGTGCATACACATAGGTCTTCTATGTGTACAAGAACTTGCTGAAGACAGACCCACTATGGCTGCAGTAATTTCTATGCTCAACAGTGAGTTTGTGCTTCCTCCTCCAACTCAATCTGCATTCATCCAGCGACAAAAGATGTTGAATTTGGCGTTATCTGAAGAAAATCGGAGATTTTGCTCCATCAATACTGTTAGTGTTACAGAAATTCAAGGTAGATAG 2529 0.3926 MRFSSHANLFFVLFVLCFHVLDVCTAIDSITSSQSIKDPETLRSEDGNFTLGFFTPQNSTNRYVGIWWKSQSTVVWVANRNQPLNDSSGIVTIAKDGNLVVLNGQKQVIWSTNVSKILSNTSSEFSDSGKLVLMETTTGNILWDSFHQPSDTLLPSMKLSINTKTNKKVELTSWESPSNPSIGSFSSGVVQRFHIIEVFIWNETRPYWRSGPWNGGVFLGIPNMSTYLNGFKGGDDGEGNTDIYYTVPSELGFVIYMLNSKGQYEQKLWDAEKNEMIIRWTSKVSDCDVYGICGPFTSCNAQSKPICSCLKGFEPRNKEEWNGKNWTGGCVRRTPLKCERVKNQNTSTDAKKDGFLKLQMVKVPDFLEGSPVESDICRSKCLENCSCVAYSHDDGIGCMSWTANLLDMQQFSEGGLDLYVRVAHSELDKGTNTKIIITTAAIIAIVIMITSACACFMWRTSKHPAKVWQLINSVRKGNNKAFVQFNNEGTPEHESHSVIEELSQVKLQELLLFDFKRAAAATDNFHLSNKLGQGGFGPVYKGELEDGQEIAVKRLSRASIQGLEEFMNEIVVISKLQHRNLVKLFGCCVEGDEKMLIYEYMPNKSLDVFIFDPSKCKLLGWRKRSSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGTQDQVNTRRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLVLEIVSGRRNSSSYGNVHALSLLGFAWIQWKEGNALSLIDPEIYDPSHHQDILRCIHIGLLCVQELAEDRPTMAAVISMLNSEFVLPPPTQSAFIQRQKMLNLALSEENRRFCSINTVSVTEIQGR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01926 842 FunFam receptor-like serine/threonine-protein kinase SD1-8 497 600 - -
Phco3g01926 842 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Phco3g01926 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Phco3g01926 842 Pfam PAN-like domain 351 408 IPR003609 -
Phco3g01926 842 ProSiteProfiles Protein kinase domain profile. 525 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01926 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Phco3g01926 842 Gene3D - 23 147 IPR036426 -
Phco3g01926 842 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Phco3g01926 842 CDD PAN_AP_plant 334 423 - -
Phco3g01926 842 Pfam D-mannose binding lectin 73 174 IPR001480 -
Phco3g01926 842 CDD STKc_IRAK 531 797 - -
Phco3g01926 842 SMART blect_4 33 149 IPR001480 -
Phco3g01926 842 Pfam Protein tyrosine and serine/threonine kinase 526 795 IPR001245 GO:0004672|GO:0006468
Phco3g01926 842 PIRSF SRK 1 842 IPR024171 GO:0004674
Phco3g01926 842 Gene3D Transferase(Phosphotransferase) domain 1 601 801 - -
Phco3g01926 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Phco3g01926 842 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Phco3g01926 842 SUPERFAMILY Protein kinase-like (PK-like) 509 796 IPR011009 -
Phco3g01926 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 787 - -
Phco3g01926 842 CDD B_lectin 33 149 IPR001480 -
Phco3g01926 842 SMART serkin_6 525 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01926 842 Gene3D Phosphorylase Kinase; domain 1 486 600 - -
Phco3g01926 842 SMART ntp_6 350 422 IPR003609 -
Phco3g01926 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01926 Phco-Chr3 43805697 43808830 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco3g01926 PK_Tyr_Ser-Thr 3.6e-47 CL0016