Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01924 ATGGGTTTCAGCAGCCACGCAAACTTGTTCTTCGTTTTGTTCATGCTGTGTTTTTATGTGTTGGACGTTGGTATTGCCACAGACACCATCACATCATCACAATCCATCAAGGACCCTGAAACTCTAAGCTCCAAAGATGGTAACTTTACTTTGGGGTTCTTCACCCCTCCAAACTCCACAAACCACTACGTCGGAATTTGGTGGAAGTCTCAATCCATAGTCGTATGGGTTGCTAACAGAGATCAACCACTGAATGATTCTTCAGGAATTGTTACCTTTTCTGAAGATGGCAATCTAGTGGTGATGAATGGGCAGAATCAAGTTATTTGGTCAACATCTGTGTCAAACACATCATCCAATACAAGTGCCCAGCTTTCAGACGTGGGGAAGCTTGAACTCACGGAAACCACAACGGGGAAGAGCTTATGGGATAGTTTTCAGCAACCTTCAGATACATTTTTGCCCGAAATGAAAATTTCAAGCAATAAAACAGGTAGTGGAGTAAAACTTACATCATGGAAGAACCCTTCTAATCCCTCTGTTGGGAGCTTCTCTGTGGGTGTTGTTGAACGCGTAAAAATCGTTGAAGCGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTTCTGGGGTCTTTACAGGGGTAGAGCAGATGAATAGTGCATATCTAAATAGTTTTTCTGTTCTAGATGGGGTACTCTATTATAACCTAGACGGTTTATCTGAATTTTTAATCTACGTTCTGAATTCGCAAGGCCAATTTGAAGAAAAACGTTGGGATGATGAGGAGAAAGAAATACAAGTTTCGTGGACAAGCAAACAATCGGATTGTGATGCTTATGGCGTATGTGGGTCGTTCGCAATCTGTGATGCACATAGCCAAGGAACAAATGGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAGGAGCAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGCTTTTGGAGCACACCCTTGCAGTGTGAAAGAGCCAAAGAGCAAAACACAAGTATAGATACAAATGAAGATAAATTTTTGGAACTGCAAATGGTGAAAGTTCCAGATTTTTCTGAATGGTCTAACGCTGATCCAGACACATGCAGAAGCCAATGCTTGGAAAATTGCTCTTGTGTTGCGTACTCTCACGATGATGGGATTGGTTGTATGTCTTGGACTGAGAATCTACTAGACATCCAACAACTCTCGGATCGAGGACTTCCTCTATATGTTCGTGTAGCCTACTCTACTGAACTTGAACATGAGGAAGGGAAAAAGACAACAATTATCATTATAGTAACAGTGATAATCGGAATTATGATCACTGTCACTTGTGCATGCGTAATGTGGAGGAGGAATTCCTGTCACCCAGCGAAAATATGGTACTCAATCAAGTCAGCAATGAAAAGGGGCAAGAAAGATTTCATACGTTTCAATGTTGAACCACTAGAACAAACAGGCCACAAAGTATTTGAAGAACTAAAGGAGCTGCTCCTGTTTGATTTCGAAAGGCTTGCAACTGCCACAAACAACTTCCACGAGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCGGTGTACAAGGGGAAACTACAAGATGGACAAGAAATAGCTGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAGTAGTCGTGATTTCCAAGCTTCAGCACCGCAATCTTGTAAGACTTCTTGGCTGCTGTACTGAAGGTGACGAAAAGATGCTACTGTATGAATACATGCCAAACAAAAGTCTGGATGTGTTTATTTTTGATCCAACAAAACATAAAGTCCTAGATTGGGGGAAGCGCTGCTCTATAATAGAAGGAATAGCTAGAGGATTGCTTTATCTTCATAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGAAAAACTGAATCCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGGAGGAACTGAAGATCACGCCAATACGAATAGGATTGTTGGAACATATGGCTACATGTCCCCTGAATATGCAATGCAAGGACTGGTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTACTGGAAGAAGAAACTCAAGCTTTTATGATGATGAGCGTTCTCTTACCCTTTTAGGATTCGTCTGGACACAGTGGAACCAAGGCAATATATTATCTTTAATAGATTCAGAAATATATGATCCTAATGATCATGAAGATATTTTAAGGCTTATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTTAGAAAGACCCACAATGGCTACAGTAATTTCTATGCTTAATAGTGATGTTGCCTTTCTTCCTCCCCCAAGTCAACCTGCATTCGTCCGGGTTCAAAATGTGTTGAATTCGGAGTCGTCTAAAGAGAGTCAAAGAGTTTGTTCCGTGAATATTATTAGTATTACAGATATCCATGGTAGATAG 2520 0.4075 MGFSSHANLFFVLFMLCFYVLDVGIATDTITSSQSIKDPETLSSKDGNFTLGFFTPPNSTNHYVGIWWKSQSIVVWVANRDQPLNDSSGIVTFSEDGNLVVMNGQNQVIWSTSVSNTSSNTSAQLSDVGKLELTETTTGKSLWDSFQQPSDTFLPEMKISSNKTGSGVKLTSWKNPSNPSVGSFSVGVVERVKIVEAFIWNETRPYWRSGPWSSGVFTGVEQMNSAYLNSFSVLDGVLYYNLDGLSEFLIYVLNSQGQFEEKRWDDEEKEIQVSWTSKQSDCDAYGVCGSFAICDAHSQGTNGSPICSCLKGFEPRSKEEWDAQNWTSGCFWSTPLQCERAKEQNTSIDTNEDKFLELQMVKVPDFSEWSNADPDTCRSQCLENCSCVAYSHDDGIGCMSWTENLLDIQQLSDRGLPLYVRVAYSTELEHEEGKKTTIIIIVTVIIGIMITVTCACVMWRRNSCHPAKIWYSIKSAMKRGKKDFIRFNVEPLEQTGHKVFEELKELLLFDFERLATATNNFHESNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCTEGDEKMLLYEYMPNKSLDVFIFDPTKHKVLDWGKRCSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEKLNPKISDFGMARIFGGTEDHANTNRIVGTYGYMSPEYAMQGLVSEKSDVFSFGVLLLEIVTGRRNSSFYDDERSLTLLGFVWTQWNQGNILSLIDSEIYDPNDHEDILRLIHIGLLCVQELALERPTMATVISMLNSDVAFLPPPSQPAFVRVQNVLNSESSKESQRVCSVNIISITDIHGR 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01924 839 CDD STKc_IRAK 527 793 - -
Phco3g01924 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 179 IPR036426 -
Phco3g01924 839 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 783 - -
Phco3g01924 839 PIRSF SRK 2 839 IPR024171 GO:0004674
Phco3g01924 839 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Phco3g01924 839 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Phco3g01924 839 SMART blect_4 33 149 IPR001480 -
Phco3g01924 839 Gene3D Phosphorylase Kinase; domain 1 486 596 - -
Phco3g01924 839 ProSiteProfiles Protein kinase domain profile. 521 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01924 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Phco3g01924 839 CDD B_lectin 33 149 IPR001480 -
Phco3g01924 839 Gene3D Transferase(Phosphotransferase) domain 1 597 797 - -
Phco3g01924 839 Pfam D-mannose binding lectin 74 174 IPR001480 -
Phco3g01924 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Phco3g01924 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Phco3g01924 839 Pfam Domain of unknown function (DUF3403) 797 839 IPR021820 GO:0004674
Phco3g01924 839 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Phco3g01924 839 SUPERFAMILY Protein kinase-like (PK-like) 505 819 IPR011009 -
Phco3g01924 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 487 596 - -
Phco3g01924 839 Pfam PAN-like domain 350 408 IPR003609 -
Phco3g01924 839 Pfam Protein tyrosine and serine/threonine kinase 524 792 IPR001245 GO:0004672|GO:0006468
Phco3g01924 839 CDD PAN_AP_plant 334 423 - -
Phco3g01924 839 SMART ntp_6 350 422 IPR003609 -
Phco3g01924 839 Gene3D - 22 147 IPR036426 -
Phco3g01924 839 SMART serkin_6 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01924 Phco-Chr3 43780182 43783364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco3g01924 PK_Tyr_Ser-Thr 1.1e-47 CL0016