Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01855 ATGGAAAACCATTTCTTCCTCAATGCTGCTGTCCCCCCTCAGCTGCATTTTCAGCCTTCACCACCTCCTTGTCCACCCTCTTGGCACTCACTCTCTTCTCCCATGGATGTTCAACTTTTGAATTCTTCAACTGACCGGACGCAGGATTGCTTCTATACACCATCATGGGACAAGTCAACGGATCATGCTGTTCAGTTTGATTCTGCACTCAGTTCCATGGTGTCCTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGACAATTTTGTCATCAGGGAGTTGATTGGGAAATTGGGAAACATTGGTGGTGGTGGTGGTGGTGGTGGCTCTGATGAGATCTCGCCTCATTCTCAGCCTTTGCTTGGTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACTCCTTTGAGTTCTCCTCCAAAGGTGAACACGAACAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGCGTGCCCCCCAGTTTGGGGACGTCAATGTCCTTGAATTCCACTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAACAATCCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGAGTGCCCAGGAGAACAATAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCAGAACAAATTCCAAATGGGGACAATGGGGTGAAACCTTCCCCTTATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCACCAACCCCCCTATGGCTACTGAAGCTAGTGAAGATTCAAATGCAAAGCGCAGCAAGCATAACGAAGGTGAAGGGAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGCAATGCAAATGATGACAAACAGAACAGGAGTAACTCAAAACCTCCAGAGGCACCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCATAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGCGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCAAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGCCCCACACCTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTACCTCACCTAAATGCCTTTAATGAAGGTGGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1722 0.4541 MENHFFLNAAVPPQLHFQPSPPPCPPSWHSLSSPMDVQLLNSSTDRTQDCFYTPSWDKSTDHAVQFDSALSSMVSSPAASNSNMSSDNFVIRELIGKLGNIGGGGGGGGSDEISPHSQPLLGASSYINGNNSTNTSCYSTPLSSPPKVNTNKIPTMMNHLVKEGVPPSLGTSMSLNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGPNNPELTHRSSPLVENGKLPRVSSSPSLKVLGSQMSAQENNNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTPTNPPMATEASEDSNAKRSKHNEGEGNENGQVKAEEESKGVTSNANDDKQNRSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPLDSSAPAFYGQHPQQNPAIHSNIPNGTVPHTSVDPLDTGLCQNLGMQLPHLNAFNEGGSQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01855 573 Pfam Helix-loop-helix DNA-binding domain 383 430 IPR011598 GO:0046983
Phco3g01855 573 FunFam Basic helix-loop-helix transcription factor 376 448 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 553 573 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 301 318 - -
Phco3g01855 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 377 448 IPR036638 GO:0046983
Phco3g01855 573 Coils Coil 426 446 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 482 501 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 319 349 - -
Phco3g01855 573 CDD bHLH_AtBPE_like 369 454 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 358 387 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 200 221 - -
Phco3g01855 573 MobiDBLite consensus disorder prediction 228 279 - -
Phco3g01855 573 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 259 485 IPR024097 GO:0006355
Phco3g01855 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 429 IPR011598 GO:0046983
Phco3g01855 573 SMART finulus 385 435 IPR011598 GO:0046983
Phco3g01855 573 MobiDBLite consensus disorder prediction 200 387 - -
Phco3g01855 573 Gene3D - 376 451 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01855 Phco-Chr3 42550196 42552578 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01855 HLH 4.6e-06 No_clan