Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01763 ATGTATCAGGGTGTTCCGGTTGCTTGCAGGACTCGAAGCAATAAGCGTGTGGTGGTCGGGAGTGGTTTGATAATGGGTCGGAAAAGGAGGAGAAAGGTGGATGAACATGACGATGAAGTGATTTACTTGGGAGAAAATTTGGAAGGCCAAACGGGTGCAAGAGGGAAATTTGCATTTGGGTCTGGGGCTTCATGTTCATCACCAGATGCTATGGAGAAGGGTTACATATTTTTGGGAGAGGGTGAGGATGATCCTATAGAGGTGGTTGACCTCGAAGGCGGTGATGAGGCTGAAGTGGGGTTTGGGTGTTGCAAAACGAAGGGTTTTCAGGTTAAGGAGGAAGAGGGGGGTGAGGAGGGTGAAGGATGTTATGTGGCAGCTGATAAAGTTGAGAGCTTTGGTGGTGATGAATACGGTGCTGTAGCTGAAAAGCCGGTTGTTTTGTTGCCTGATTCAGATAGTAGTTTTGATAATGGATATGATTCGTTTTGGTCTTCAACGGAGAGTGAGGATTTTGAGACGAGTGATGATGATTTTATGGTTGAAGGGGATGATGATGGAGTTGAGAGTGAATACTCGAGCAGTGCGGAGAGTGATGATTCTTCTGAAGATGATGAGAGGGGGGGATCCAAGATGGTTAAGGAGAGGATAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAATGAACGGTAAAAGGAAGATTAGGCATGTAGAGGAGGAGAAATGGAATGGTGCTGATTGTGCTAGCGTGGCATCTAGTAAATCGGAGATTTATGAGGAAAGAAAAAAGGTTGGAGAGAAACAAGAAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTCTTTAATGTTCAGTGGCAAACTTCAGGTCTCTCTGTGCCTTCTGAAGATGAGGCACTAGAGGATAAGGAGAAAGGAGGTAGGGGTCTTCAAAGGGTGTTCATTCAAAAAGAGACAGGATATTCAACTGTGATCAAGATGAGGGAGAAGAATAATAAGGTCAAGGCCAATCTTAAAGAAACTGGACATAAAGATGAGCTCCATGAAATCCTGAGGATGTCACCGACAACAAAGAACCAATGTTTTAAATTCTTCACTGAATGCTTTAGGGGCAAGCGTGATTCTGCTAAAGATGTCTCAATAGATTTGGGAGAAAAGATTGAAGTTGATCAGGGTCAGACTCGGCCATTAGGTTCTAAGGAGACAATCCCTTTAAACTGCAACTCTATGATGAAAGAAAAACCTATCGAAAAATCAGAGTCAGAGAAAGAGTTGGATATGTTGTGGGAAGAAATGGAGATGTTGCTTCAAGCTGAAAAAATTGGATTCCAGGTTGATAATATAAAGACAAATGAAGCAAGAGAAAACGAAGAAAATCCAGCCCCGCAGTGCAAACATGACACTATTTTTGATGAGCAGATTGGTATATACTGCAGATGGTGTGGTTGGATTGACACTGAAATTAAATATATCACACCACAATTTATAGATTCTGAGAGATGTGGAAGAAGGGTGTTGTCTGGTGGAGGGAAGACCTCCGGATTTGATGGGGTTCTGTTCACTGAAACTGGTGAAGGATCAGAAGCAGTCAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGACCTTTCCAAGTTGAAGAGGGTTGATGCTGAGACTGAGGGCGGGTGCATAGTTTCTCATGCTCCAGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACATATTTGCAAGTGTTTCCCAAGTGTTTGCCTGTTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAAGAAATGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAAGAACATGCCATTAGGGAAGTTGATTGGTCATTCAACCAACAGCAGAAGAAGGATGCAATAAGAATGTTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAGAAGCTAGCCGGGGGAAAGTCTGAAGGAGACGGGGAGAAAGAGAAGAAAAATAGAAAGATTGGAAAAGAGAAGAAACGTGCAAGATCTAGGGAGTATGTTGAAACTGCATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGCCACACACCCAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAAAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCGTGAACTCTACAATATTTTATGCTTAATGAAACCATCTTTTCCTGAAAGCATACCGCAAGAACTCAAAAAGTTTTTGAAAAATAAACTAATACAGGAAACCAAAGCTTCAAAAGATGTGAGTTGGGAACCAATTTCTGCTGGAAATCAAAACGAGGAAAAAATAAAGCAGCTAAAGGTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTATTCTTCAGAAGAACCTTCCTGGTTTAAGAGATTGTGTGCTGATTTTGAAGCCAGAATGCTTGCAGCAAACAATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAATTTTGAGCACACGTTGGCCTTGGTCTCTGTCCATCCCTCCCTTTTTCTCAACTGCACTCTGTCAAAGAAAGAAAAATCTGTTGTTGACTCAGAGCAGTTGAAAAGGATTAGATTGGACCCTTATGAAGGAGTCAAAACCAAATTTCTGATTGAGTTTGTTAGACTGTGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATCAAGGACCAGCTGGAGTCAGCCTTCGATTGGACTGTGGGAACTGAAGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAATTTCTGATTCATAGTTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTGGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGCCGAGCGTATAGACTTGGACAGAAAAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATTGTAAACAGTCAGAGAAGGACCGGTTATCTGAACTGGTATTCTCAAGTAGAAATGTTGAAAATGATGACGAGCTTAAGAATGTTGGAGTAAAGTTTGTAGATAAAGTTCTTGATATCATGGTTCAGCACAAAAATCTCAAGGACATATTTGGTGAATGTCTGGTTCAACCAAAGGACAGAGATTTTGAAACTTTGGGCCCCTAA 3441 0.4185 MYQGVPVACRTRSNKRVVVGSGLIMGRKRRRKVDEHDDEVIYLGENLEGQTGARGKFAFGSGASCSSPDAMEKGYIFLGEGEDDPIEVVDLEGGDEAEVGFGCCKTKGFQVKEEEGGEEGEGCYVAADKVESFGGDEYGAVAEKPVVLLPDSDSSFDNGYDSFWSSTESEDFETSDDDFMVEGDDDGVESEYSSSAESDDSSEDDERGGSKMVKERIRKVVSESESSRVWRMNGKRKIRHVEEEKWNGADCASVASSKSEIYEERKKVGEKQEANRVENVNNADPEVFNVQWQTSGLSVPSEDEALEDKEKGGRGLQRVFIQKETGYSTVIKMREKNNKVKANLKETGHKDELHEILRMSPTTKNQCFKFFTECFRGKRDSAKDVSIDLGEKIEVDQGQTRPLGSKETIPLNCNSMMKEKPIEKSESEKELDMLWEEMEMLLQAEKIGFQVDNIKTNEARENEENPAPQCKHDTIFDEQIGIYCRWCGWIDTEIKYITPQFIDSERCGRRVLSGGGKTSGFDGVLFTETGEGSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTTDLSKLKRVDAETEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELKKWNIGIPFHNLNNAELSGKEHAIREVDWSFNQQQKKDAIRMLKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKKNRKIGKEKKRARSREYVETALGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFRELYNILCLMKPSFPESIPQELKKFLKNKLIQETKASKDVSWEPISAGNQNEEKIKQLKVLMNPFVHVHKGSILQKNLPGLRDCVLILKPECLQQTILESIDCSQNALNFEHTLALVSVHPSLFLNCTLSKKEKSVVDSEQLKRIRLDPYEGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFDWTVGTEVLYMHGKLDQKQKQFLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYCKQSEKDRLSELVFSSRNVENDDELKNVGVKFVDKVLDIMVQHKNLKDIFGECLVQPKDRDFETLGP 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01763 1146 SMART ultradead3 551 807 IPR014001 -
Phco3g01763 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 851 IPR027417 -
Phco3g01763 1146 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 154 1140 IPR044567 GO:0080188
Phco3g01763 1146 Gene3D - 531 852 IPR038718 -
Phco3g01763 1146 Pfam SNF2-related domain 573 882 IPR000330 GO:0005524|GO:0140658
Phco3g01763 1146 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 581 799 IPR014001 -
Phco3g01763 1146 MobiDBLite consensus disorder prediction 204 219 - -
Phco3g01763 1146 MobiDBLite consensus disorder prediction 704 724 - -
Phco3g01763 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1099 IPR027417 -
Phco3g01763 1146 SMART helicmild6 973 1058 IPR001650 -
Phco3g01763 1146 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1104 IPR001650 -
Phco3g01763 1146 MobiDBLite consensus disorder prediction 170 203 - -
Phco3g01763 1146 Pfam Helicase conserved C-terminal domain 950 1058 IPR001650 -
Phco3g01763 1146 MobiDBLite consensus disorder prediction 160 219 - -
Phco3g01763 1146 CDD SF2_C_SNF 940 1069 - -
Phco3g01763 1146 Gene3D - 868 1130 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01763 Phco-Chr3 39697280 39701599 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco3g01763 SNF2_N 2.5e-20 CL0023