Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01762 ATGAATCGAGGGGCTCCCATTGCTTGCAGGACGCGTAACAAGAAGAGAAAGTTGTTTGAGAATGCTTTACTAATGAGTCGGAAGAGGAAGAAGGCACGGGAACATGAAGCTATTTTCTCCAATGGTGTAGGTGCAAGTGTGAAAGTTGAACCTGGGTCCGTCGCTTCGTTGACATCTTCTGCTGCTCTTGCAATGAACAGTGAAATAGTTTCGGAACGTGGTTCTCAGCGTTTGGGAGAGCATATGGGCGACCCTATTGTAATCAGTGATGGTGATGATGGCAGTGAGGCTGAAGAGGGGTTGAGGGATCCTGAGAGCGATATATTTTGGGTTAAAGTGGAAACGAAGAGTGAGGAGGATAAAGGGTCTTTAGTGTTGGGTGATAAAGTTGTGAACTTTGGCGATGATGACTATGGTCGTGTATATGGAAAGCCGGTTGCATTGTCGACTGATGAAGATGAAGATGATCATGGTGATTTGCTTGTGTCTTCAACTGAGAGTGATGATGATGAGACGAGCGATGAAGATTTTCAGGTTACCAATGATGACGATGATGATGGGTTTGAGACTGAAGACTCAACCAGTGACGAGAGTGATGGCGATGATGGTTGTGGTGGTGGTGGTGATGTGAGGGGGGGTCACAGGAAGACGGTGAAGGGTATGGTGAGAAAGATGGAGAGTGATACTGAAAGCAGTGAAATTTGCAAAAGGAAAGGTAATGATCAGGTAGATGAGGAGGAGCAATGGATTGGCGCTGATTGTACTAGTGCGACCTCTAGTAGATCTGAGATTTATAAGAAGGAAGGAAAACATGCAACACATGAACACGAAGCAAAGAGAGTGCAAAGTGTCATTGCTGATTTTGAAGTCCGTGGTGTTCACGGGGGAAAGTCAGGTTGTTCTATGCCTTCTGAAGCCCTGGAGCATAAGAAGGAAAGTGATAGAGGTGATCAAAGTGCGACATTGCAGAAACAGATAGGAGATTCAACTGTGGTCGAGGAGAGCGGGAGCAAAAAAAATATCAAGGCCATTGACCGGGTGAATATTGATGATATTGAAAGAAAAGAGAATCAACACAACAAAGGAACAGGTCCGAGGAGTGTTTCTTTTAGTCCAAAAACCCAAGAGAAGATAGGAGATTCTGCTAAAATTGTAATGGGAAAGGACAAGGTAGGGAAACATAAATATTGGTTTAATAGCAATAACCGTGAGAAAGTCAGGGTGGTGGATGATGAAACTGGTGACAAAGAGCTGCATGAAGTCCTAAGGATGCCATCTACATTGAAAAACAGTTGTTATAAATTTTTTACTGAATGTTTTATGGGCAAGAATGATTCTGTTAAGGATGATTCAAATAAGTTGGATGAAAAGGATGATGATGTTGCTGAGGGACAGACTCAGCCATTAGTTTCTAGGCAGCGAATCCCTTTTCATTGTGGCTTTATCAACGAAGAAGAACCTATAGAAAAGTCAGAGCAAGAGAAGGAGTTAGATGTGTTGTGGGGTGAAATGGATATGTTGCTTCGAGTTGAAGAAATTGGGACCCAGGTTAATAATATAGGGACAAATGAAGCAAGAGAAAACGAAGAAAGTCCAGCCTCGAAGTGCAAGCATGACACTATTTTTAATGAGCAGATTGGGATATATTGTAGATGGTGTGGTTGGATCGAGACTGAAATCAAATATATCACGCCACCATTTGTGGATTCTGAAAGATATGGTGGTAGAAGGGTGGCATCTGATGGAGGGAACATCTCGAAATTGGATAGGGCTCTGTTGAATGAGTCTGAAGATGACTTGGAGGCAATTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATTAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAACTTGGGAGGAACTATTGACCTTGCCAAATTGAAGAGTGTTGACCCCTGCAATGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCTAAGTGTCTACCTGTTATCATTGCTCCTTCCAACATATTGCTTACTTGGGAAGACGAGCTGAGAAAGTGGAATCTAGGAATTCCATTCCATAACTTGAACAGCGCTGAATTATCAGGAAAAGAACAAGTCATCAATGAAGTTGATTGGTCTGGCAATCAGAGGCAGAATAAGGATGCCATACGGATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGCTAGCAGGGGCCACGTCTGGAGATGATGGGGAAAAAGAGAAGAATAATGGAAAGATCGAGAAAAAGAAACATGCAAGGACAAGGGAGTACATTGAAATTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGACGAAGGACACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGGAAGTAGAACTCAGAAGCGAATTCTTCTCTCAGGGACTCCTTTCCAGAACAACTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAACATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTTATGCACCAAAGGAGAGCATCAAAAGACATGAGTTGGGAACCTGTTTCTTCTGGAAATCCAGCAAAGGAAAAAATAAAGCAGCTAAAATTGCTGATGAACCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGAATGTGTGTTGGTTCTGAAGCCAGACACTTTTCAGCAAGAAACTCTAGAGAGCATTGAATACTCTCAAAACGTACTAAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAGCTGCTCTTTGTCAAAAAAAGAAGAATCCATTGTTGACAAGGGTAAGTTGGAAAAAATAAGATTGAACCCTTATGCAGGGGTGAAAACCAAATTTCTGATCGAGTTTATAAGACTATGCGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGCTCGAGTCAGCCTTCAATTGGACTTTGGGGATGGAAGTGTTATATATGTATGGCAGGCTTGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATGCAAATAGCCAAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAACTGGAGCTTCAAGGGTCGTGATTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTAGGACAAAAGAAGGTTGTTTTCACTTATCATCTACTTGCCCAGGGCACCCCTGAATGCACCAAATACTGCAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGAAATGCTGAAAGCGATAAGGTCAAGAGTAGGGGAGTAATGCTTGAGGATTTTGAAGATAGAGTTCTTGATCTCATGGTTCAGCATGAAAAACTCAAGGATATGATTGGTGAATGTATAATCCAACCTAAGAAGAGAGATTTGGAGATTTTGGGCCCCTGA 3645 0.4176 MNRGAPIACRTRNKKRKLFENALLMSRKRKKAREHEAIFSNGVGASVKVEPGSVASLTSSAALAMNSEIVSERGSQRLGEHMGDPIVISDGDDGSEAEEGLRDPESDIFWVKVETKSEEDKGSLVLGDKVVNFGDDDYGRVYGKPVALSTDEDEDDHGDLLVSSTESDDDETSDEDFQVTNDDDDDGFETEDSTSDESDGDDGCGGGGDVRGGHRKTVKGMVRKMESDTESSEICKRKGNDQVDEEEQWIGADCTSATSSRSEIYKKEGKHATHEHEAKRVQSVIADFEVRGVHGGKSGCSMPSEALEHKKESDRGDQSATLQKQIGDSTVVEESGSKKNIKAIDRVNIDDIERKENQHNKGTGPRSVSFSPKTQEKIGDSAKIVMGKDKVGKHKYWFNSNNREKVRVVDDETGDKELHEVLRMPSTLKNSCYKFFTECFMGKNDSVKDDSNKLDEKDDDVAEGQTQPLVSRQRIPFHCGFINEEEPIEKSEQEKELDVLWGEMDMLLRVEEIGTQVNNIGTNEARENEESPASKCKHDTIFNEQIGIYCRWCGWIETEIKYITPPFVDSERYGGRRVASDGGNISKLDRALLNESEDDLEAIWSHNEGTVWDLIPDIKQSLYPHQQEGFEFIWTNLGGTIDLAKLKSVDPCNEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPSNILLTWEDELRKWNLGIPFHNLNSAELSGKEQVINEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSGDDGEKEKNNGKIEKKKHARTREYIEIGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSGSRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDNIPQELKKFCQSRLMHQRRASKDMSWEPVSSGNPAKEKIKQLKLLMNPFVHVHKGSILQKNLPGLRECVLVLKPDTFQQETLESIEYSQNVLNFEHKLALVSVHPSLFLSCSLSKKEESIVDKGKLEKIRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLNLIKDQLESAFNWTLGMEVLYMYGRLDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLTGASRVVILDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDKVKSRGVMLEDFEDRVLDLMVQHEKLKDMIGECIIQPKKRDLEILGP 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01762 1214 MobiDBLite consensus disorder prediction 447 463 - -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 77 103 - -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 208 243 - -
Phco3g01762 1214 Pfam Helicase conserved C-terminal domain 1009 1124 IPR001650 -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 350 375 - -
Phco3g01762 1214 SMART ultradead3 618 873 IPR014001 -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 304 318 - -
Phco3g01762 1214 Gene3D - 927 1206 IPR027417 -
Phco3g01762 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 892 IPR027417 -
Phco3g01762 1214 SMART helicmild6 1039 1124 IPR001650 -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 152 203 - -
Phco3g01762 1214 Gene3D - 595 915 IPR038718 -
Phco3g01762 1214 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 180 1208 IPR044567 GO:0080188
Phco3g01762 1214 MobiDBLite consensus disorder prediction 447 467 - -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 139 243 - -
Phco3g01762 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 1170 IPR027417 -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 295 338 - -
Phco3g01762 1214 Coils Coil 1176 1196 - -
Phco3g01762 1214 CDD SF2_C_SNF 981 1135 - -
Phco3g01762 1214 MobiDBLite consensus disorder prediction 319 336 - -
Phco3g01762 1214 Pfam SNF2-related domain 644 952 IPR000330 GO:0005524|GO:0140658
Phco3g01762 1214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1012 1180 IPR001650 -
Phco3g01762 1214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 648 865 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01762 Phco-Chr3 39658573 39662930 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco3g01762 SNF2_N 2.9e-19 CL0023