Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01710 ATGGTGTTCCTCTTTCCGATGCTTCTGTCCATGAAGCTCCAACCTTCATGGCTTCTTCTTGTAATGTTCTTTTGTGCATTTCCCCATTATCATGCTGCCAATTCTTCTGATATTGATTCAGAAGTAAATGCTTTGTTGAAGTGGAAAGCCAGCCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCACTAATCCTTGCAACTGGCTGGGAATTGCATGTCATCATGATTCCAATTCTGTTTCTGACATAAATCTTACACGTGTTGGATTAAAAGGTACACTTCAAACTTTTAACTTCTCATCACTTCCAAACATTCTCACTCTCAATATCAGTTACAACTCCTTGTCTGGAAGTATTCCTCCACAGATTCAACACTTGTCCAATCTCAGTACACTTGATTTGTCTACCAATAAACTCTCTGGTTCCATTCCCAATACCATCTGTAATCTCTCCAAACTCAAATATCTGAATCTTAGTGTCAATTCTCTCTCTGGTCCTATTCCAAATGAAGTTGGCAATCTCCACTCTCTTCTCACATTCGATATATTTGCCAACAACCTCTCTGGACCAATCCCTCCTTCCTTAGGTACCTTGCCCCTTTTGGAATCCATTCACCTTTTTGAAAATAAACTCAATGGATCCATTCCTTCCACTCTTGGAAATTTGACCAAGCTCACTATGTTATCTTTATCATCAAATCAACTCACTGGATCCATTCCTCCCCATATTGGAAATTTAACAAACGCCAAGGTAATATGTTTTATTGGAAATGAACTTACTGGCGAAATTCCAATAGAACTGGAGAAGCTTACTGGTCTGGAATGTTTGCAACTAGCTGATAACAATTTTATAGGCCAAATACCTCAGAACATTTGCCTAGGTGGAAACATGAAATACTTCACTGCAGGTAATAACAATTTCACAGGCCCAATTCCAGAGACTTTGAGGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAAGTGGGGATATAACAAACTTTTTTGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATAATTTTCATGGTAATCTTTCACCTAGTTGGGGAAAATTCCGTAGCCTTACAAGCCTCATGATCTACAACAATAACTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGGTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATTAGCAACAATAATCTTTCAGGAAATGTTCCTATGAAAATAGAGTCACTGCAGGAACTTAAAATTTTGGACCTTGGATCAAATGATTTCAGAGGCTTAATCCAAAAACAACTTGGAAATTTGCACAATTTATTGCGCATGAGTCTGAGACAGAATAAATTTGAGGGAAATATTCCTTCAGAGCTTGGCAATTTGAAATATCTCTCAAGTCTGGATCTCAGTGAAAATTTGTTGAGTGGAACATTACCACCGACGCTTGGTGGAATAAAGGGCTTAGAAGCATTGAATCTATCGCACAATAGTCTTTCAGGTGATCTCTCGAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTGACAATCCAGTCTTCGAGAATGCTACAATTGCATCCTTGAGAGATAATAAAGGCCTGTGCGGCAATGTCTCAGGCTTGGTGCCTTGCCCAACAGGAAGTGCGAAATCTCATAATAACAAGACAAGGACAGTGCTAATAGCAGTTTTACCCCTTGCTCTGGCCATTCTAATGCTTGGACTATTTGTTTATGGGGTCTCCTATCATTTTTGCCGAACTCCAAACAAAGAAAAAGACCAGACTACAAGTTTACGATGTCCCAGCGTGTTTCCAATATGGAGTTTTGGAGGCAAAATTATGTTTGAAAATATTATTGAAGCCACCGAATATTTTGATGACAAGTATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAATATTACCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATGCAGTTTCAAATGGAGAAATCCTGAATCAGAAAGCTTTCGCAAGTGAGATCCAGGCTTTGACAGAAATTCGACATCGTAACATTCTAAAGTTTCATGGGTTTTGCTCGCATTCACAATACTCATTTCTGGTGTTCGAATTCCTGGAGAGGGGCGATGTGAAGAAGATTTTGAAGGATGATGAACTAGCAACAGCTTTTGATTGGAATAAAAGGGTGGATGTTGTTAAAGACGTGGCAAAAGCATTATGCTATATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTTGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAATTCATCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTGTTTGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACACCTTTATTGCAATCTTCTTTATCAATTGGTACGAGCTCAACATTTGATCATATGGCATTGATGGATAAGTTGGATGAACGTCTCCCTGATCCAACAAGTTCTACTCTGAAAGAGGTGCTATCAATTGTGAAGGTAGCAATTGCTTGCTTGACTGAAAGTCCACGATCTCGCCCAACCATGAAGCTTGTTACCGACGAGCTTGCAATGTCAAGGTCATCTTCAATATCACGCACAGACCTCAAAGACTGA 2859 0.3949 MVFLFPMLLSMKLQPSWLLLVMFFCAFPHYHAANSSDIDSEVNALLKWKASLDNHSQASLSSWNGTNPCNWLGIACHHDSNSVSDINLTRVGLKGTLQTFNFSSLPNILTLNISYNSLSGSIPPQIQHLSNLSTLDLSTNKLSGSIPNTICNLSKLKYLNLSVNSLSGPIPNEVGNLHSLLTFDIFANNLSGPIPPSLGTLPLLESIHLFENKLNGSIPSTLGNLTKLTMLSLSSNQLTGSIPPHIGNLTNAKVICFIGNELTGEIPIELEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPETLRKCYSLKRLRLQQNHLSGDITNFFDVLPNLNYIDLSENNFHGNLSPSWGKFRSLTSLMIYNNNLSGVIPPELGGATKLQVLDLSSNHLTGNIPEDLCNLTLLFDLSISNNNLSGNVPMKIESLQELKILDLGSNDFRGLIQKQLGNLHNLLRMSLRQNKFEGNIPSELGNLKYLSSLDLSENLLSGTLPPTLGGIKGLEALNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPDNPVFENATIASLRDNKGLCGNVSGLVPCPTGSAKSHNNKTRTVLIAVLPLALAILMLGLFVYGVSYHFCRTPNKEKDQTTSLRCPSVFPIWSFGGKIMFENIIEATEYFDDKYLIGVGGQGCVYKAILPTGEVVAVKKLHAVSNGEILNQKAFASEIQALTEIRHRNILKFHGFCSHSQYSFLVFEFLERGDVKKILKDDELATAFDWNKRVDVVKDVAKALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVFALEILFGRHPGDVTPLLQSSLSIGTSSTFDHMALMDKLDERLPDPTSSTLKEVLSIVKVAIACLTESPRSRPTMKLVTDELAMSRSSSISRTDLKD 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01710 952 PRINTS Leucine-rich repeat signature 132 145 - -
Phco3g01710 952 PRINTS Leucine-rich repeat signature 513 526 - -
Phco3g01710 952 SUPERFAMILY L domain-like 67 387 - -
Phco3g01710 952 FunFam MDIS1-interacting receptor like kinase 2 isoform A 195 294 - -
Phco3g01710 952 Gene3D Ribonuclease Inhibitor 36 188 IPR032675 -
Phco3g01710 952 ProSiteProfiles Protein kinase domain profile. 664 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01710 952 FunFam Leucine-rich repeat receptor protein kinase MSP1 627 742 - -
Phco3g01710 952 Gene3D Phosphorylase Kinase; domain 1 628 742 - -
Phco3g01710 952 SMART LRR_typ_2 153 177 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 369 393 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 105 128 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 273 297 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 441 464 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 489 513 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 394 417 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 129 152 IPR003591 -
Phco3g01710 952 SMART LRR_typ_2 225 249 IPR003591 -
Phco3g01710 952 ProSiteProfiles Leucine-rich repeat profile. 395 418 IPR001611 GO:0005515
Phco3g01710 952 SUPERFAMILY L domain-like 319 575 - -
Phco3g01710 952 Gene3D Ribonuclease Inhibitor 189 256 IPR032675 -
Phco3g01710 952 Pfam Leucine rich repeat N-terminal domain 39 76 IPR013210 -
Phco3g01710 952 Pfam Protein kinase domain 666 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01710 952 ProSiteProfiles Leucine-rich repeat profile. 515 537 IPR001611 GO:0005515
Phco3g01710 952 FunFam MDIS1-interacting receptor like kinase 2 743 943 - -
Phco3g01710 952 Pfam Leucine rich repeat 370 430 IPR001611 GO:0005515
Phco3g01710 952 SUPERFAMILY Protein kinase-like (PK-like) 641 937 IPR011009 -
Phco3g01710 952 FunFam Uncharacterized protein 295 592 - -
Phco3g01710 952 Gene3D Transferase(Phosphotransferase) domain 1 743 950 - -
Phco3g01710 952 PANTHER LEUCINE RICH REPEAT KINASE 2 201 942 - -
Phco3g01710 952 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515
Phco3g01710 952 SMART LRR_sd22_2 441 467 - -
Phco3g01710 952 SMART LRR_sd22_2 393 419 - -
Phco3g01710 952 SMART LRR_sd22_2 129 155 - -
Phco3g01710 952 SMART LRR_sd22_2 225 251 - -
Phco3g01710 952 Gene3D Ribonuclease Inhibitor 257 583 IPR032675 -
Phco3g01710 952 ProSitePatterns Tyrosine protein kinases specific active-site signature. 788 800 IPR008266 GO:0004672|GO:0006468
Phco3g01710 952 FunFam Nuclear pore complex protein NUP107 38 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01710 Phco-Chr3 29993710 29996698 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g01710 Pkinase 5.6e-43 CL0016