Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01707 ATGCTGTTCATATTTCCACCACTTCTGTCCATGAAGCTCCAACCTTTATGGCTGCTTCTTCTAATGTACTTTTGTGCATTTGCAGTGGCCTCTTCTCCTAATCATGATGCTGTTGCTTCTTCTGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGCCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCACTAATCCTTGCAACTGGCTGGGAATTGCATGTCATCATGATTCCAATTCTGTTTCTGACATAAATCTTATACGTGTTGGATTAAAAGGTACACTTCAATCTTTTAACTTCTCATTACTTCCAAACATTCTCACTCTCAACATCAGTTACAACTCCTTGTCTGGAAGTATTCCTCCACAGATTCAACACTTGTCCAATCTCAGTACACTTGATTTGTCTACTAATAAACTCTCTGGTTCCATTCCCGATACCATCTGTAATCTCTCCAAACTCAAATTTCTGAATCTTAGTGTCAATTCTCTATCTGGTCCTATTCCAAATGAAGTCGGCCATCTCCACTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGACCAATCCCTCCTTCCTTAGGTACCTTGCCCCTTTTGGAATCCATTCACCTTTTTCAAAATAAGCTCAATGGATCCATTCCTTCCACTATTGGAAATTTGACCAAGCTCACTTTGTTATCTTTATCATCAAATCAACTCACTGGATCCATTCCTCCCCATATTGGAAATTTAACAAACGCCAAGGTAATATGTTTTATTGGAAATGAACTTACTGGCGAAATTCCAATAGAAATGGAGAAGCTTACTGGTCTGGAATGCTTGCAACTAGCTGATAACAATTTTATAGGCCAAATACCTCAGAACATTTGCCTAGGTGGAAACATGAAATACTTCACTGCTGGTAATAACAATTTCACAGGCCCAATTCCAGAGACTTTGAGGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACAAACTTTTTTGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATTATTTTCATGGTAATCTTTCACCTAGTTGGGGGAAATTCCGTAGCCTCACAAGCCTCCTGATCTCCAACAATAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGATGCTTGATCTATCCTCAAACCATTTCACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATTAGAAACAATAATCTTTCCGGAAATGTTCCCATGAAAATAGAATCACTGCAGGAACTTCAAATTTTGGAGCTTGGATCAAATGATTTCAGTGGCTTTATCCAAAAACAACTTGGAAATTTGCACAATTTACACAACATGAGTCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCAGAGCTTGGCAATTTGAAATATCTCTCAAGTCTGGATCTCAGTGGAAATTTTTTGAGTGGAACATTACCACCGACGCTTGGTGGAATAAAGGGCTTAGAAGCATTGAATCTATCGCACAATAGTCTTTCAGGTGATCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTAACATTCCAGTCTTCGAGAATGCTACAATTGCATCCTTGAGAGATAATAAAGGCCTGTGCGGCAATGTCACAGGCTTGGTGCCTTGCCCAACAGGAAGTGTGAAATCTCATAATAATACGACATGGAAAGTGCTAATAGTAGTTTTACCCCTCACTGTGGCCATTCTAATGCTTGGACTATTTGTTTTTGGGGTCTCCTATCATTTTTGCCGAACTTCAAACAAAGAACAAGACGAGGCTACAAGGTTACGATCTCCCAGCATATTCCCAATATGGAGTTTTGGTGGCAAAATTATGTTTGAGAATATTATTGAAGGCACAGAAAATTTTGATGACAAACATCTGATTGGAGTTGGAGGGCAAGGATGTGTTTACAAAGCAATACTACCTACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCATTTCCAAATGAAGAAATGCTGAACATGAAAGCTTTCACAAGGGAGATCCAAACTTTGACAGAAATTCGACATCGAAACATTGTAAAGCTACATGGGTTTTGTCCACATTCAAAATATTCATTTTTGGTGTGTGAATTTCTAGAGAAGGGCGATGTGAAAAAGATTTTGAAGGATGACGAACAAGCAATTGCATTTGATTGGAAGAAAAGGGTGGATGTTATTAAAGGTGTAGCAGATGCTTTATGCTATATGCACCATGATTGCTCACCTCCAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCGGAATATGTAGCTCATGTCTCAGACTTCGGTACAGCTAAGTTTCTGAATCATAATTCATCAAATTGGACCTCATTCGCAGGAACCTTTGGATATGCTGCCCCAGAACTTGCATACACAATGGAGGCAAATGAGAAATGTGATGTGTATAGTTTTGGGGTGTTAGCATTGGAAATATTGTTTGGAAGGCATCCTGGTGATATTACATCTTCATACATTGGAGTGAGCTCAACACTTGATGATATGGTATTGATGGATATGTTGGACGAACGTCTTCCTCATCCAACAAGCCATATAATTAAGGATGTGGTATCAATTGTGAAGACAGCAATTTCCTGCTTGATTGAAAGCCCACGATCTCGCCCTACCATGGACCAAGTTGTCAAGGAGCTTCTAACGTCAAACTCATCTGTTTTACAACATACGAACCTAGAGCAAAAAGACTGA 2853 0.3915 MLFIFPPLLSMKLQPLWLLLLMYFCAFAVASSPNHDAVASSEANALLKWKASLDNHSQASLSSWNGTNPCNWLGIACHHDSNSVSDINLIRVGLKGTLQSFNFSLLPNILTLNISYNSLSGSIPPQIQHLSNLSTLDLSTNKLSGSIPDTICNLSKLKFLNLSVNSLSGPIPNEVGHLHSLLTFDIFTNNLSGPIPPSLGTLPLLESIHLFQNKLNGSIPSTIGNLTKLTLLSLSSNQLTGSIPPHIGNLTNAKVICFIGNELTGEIPIEMEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPETLRKCYSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENYFHGNLSPSWGKFRSLTSLLISNNNLSGVIPPELGGATKLQMLDLSSNHFTGNIPEDLCNLTLLFDLSIRNNNLSGNVPMKIESLQELQILELGSNDFSGFIQKQLGNLHNLHNMSLSQNKFEGNIPSELGNLKYLSSLDLSGNFLSGTLPPTLGGIKGLEALNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPNIPVFENATIASLRDNKGLCGNVTGLVPCPTGSVKSHNNTTWKVLIVVLPLTVAILMLGLFVFGVSYHFCRTSNKEQDEATRLRSPSIFPIWSFGGKIMFENIIEGTENFDDKHLIGVGGQGCVYKAILPTGEVVAVKKLHSFPNEEMLNMKAFTREIQTLTEIRHRNIVKLHGFCPHSKYSFLVCEFLEKGDVKKILKDDEQAIAFDWKKRVDVIKGVADALCYMHHDCSPPIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNHNSSNWTSFAGTFGYAAPELAYTMEANEKCDVYSFGVLALEILFGRHPGDITSSYIGVSSTLDDMVLMDMLDERLPHPTSHIIKDVVSIVKTAISCLIESPRSRPTMDQVVKELLTSNSSVLQHTNLEQKD 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01707 950 Gene3D Ribonuclease Inhibitor 40 192 IPR032675 -
Phco3g01707 950 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Phco3g01707 950 FunFam Uncharacterized protein 296 593 - -
Phco3g01707 950 FunFam Nuclear pore complex protein NUP107 39 195 - -
Phco3g01707 950 Gene3D Ribonuclease Inhibitor 193 297 IPR032675 -
Phco3g01707 950 FunFam MDIS1-interacting receptor like kinase 2 744 939 - -
Phco3g01707 950 ProSitePatterns Tyrosine protein kinases specific active-site signature. 789 801 IPR008266 GO:0004672|GO:0006468
Phco3g01707 950 Gene3D Transferase(Phosphotransferase) domain 1 744 949 - -
Phco3g01707 950 SMART LRR_typ_2 106 129 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 395 418 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 274 298 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 130 154 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 466 490 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 370 394 IPR003591 -
Phco3g01707 950 SMART LRR_typ_2 226 250 IPR003591 -
Phco3g01707 950 Gene3D Phosphorylase Kinase; domain 1 626 743 - -
Phco3g01707 950 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Phco3g01707 950 SMART LRR_sd22_2 442 468 - -
Phco3g01707 950 SMART LRR_sd22_2 226 252 - -
Phco3g01707 950 SMART LRR_sd22_2 130 156 - -
Phco3g01707 950 Pfam Leucine Rich Repeat 396 418 IPR001611 GO:0005515
Phco3g01707 950 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01707 950 Pfam Protein kinase domain 666 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01707 950 ProSiteProfiles Leucine-rich repeat profile. 516 538 IPR001611 GO:0005515
Phco3g01707 950 FunFam Leucine-rich repeat receptor protein kinase MSP1 627 743 - -
Phco3g01707 950 SUPERFAMILY L domain-like 291 568 - -
Phco3g01707 950 SUPERFAMILY Protein kinase-like (PK-like) 642 933 IPR011009 -
Phco3g01707 950 PRINTS Leucine-rich repeat signature 514 527 - -
Phco3g01707 950 PRINTS Leucine-rich repeat signature 133 146 - -
Phco3g01707 950 Gene3D Ribonuclease Inhibitor 298 592 IPR032675 -
Phco3g01707 950 FunFam MDIS1-interacting receptor like kinase 2 isoform A 196 295 - -
Phco3g01707 950 SUPERFAMILY L domain-like 68 388 - -
Phco3g01707 950 PANTHER LEUCINE RICH REPEAT KINASE 2 205 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01707 Phco-Chr3 29627038 29630019 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g01707 Pkinase 1.2e-45 CL0016