Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01703 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAAGAAGATCATAAGCTCATGAATTTTATTCTCAACAATGGCATCCATTGCTGGAGAAGGGTTCCTAAACTAGCAGGTCTTCTAAGATGTGGAAAGAGTTGCAGACTCAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGTTCAAATTATAGAACTACATTCACGTCTTGGTAATAGATGGTCAAAGATTGCTTCACATTTTCCTGGGAGGACAGACAACGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAGGCTCAAACTCCTTGGTCTGGACCCCGTGACCCACAAGCCAATTGAGTCAAAGGAAAGTACCGATGAGGGCACAAATAATACCGATTATCCTCATACTTCTATTTCTGGAGGGTCTCTGCAAAATGTGGAGATTAAATCCTTGGAGAGTGTTGGCACCAAAGAAATGACAGAAACAGAAGGGGAAGGAGAAGAAAAGAATGTGACATGGGATGACACTACTGAACTTTTAAACAATTTTGAAATGCTATGCTCACCGTTGGAGTTGGGATCGTGGGTGAGTCAAGAAACCAATACTAGTACTAATTCTTTGTGTAGTTCATCTGTCTCTCTGGATGATGAATCCTCTTACATACTGGAAAACTCCTTAGAGCAATGGGTAGATAGTATGAATTCCATTCTCTCGTGGGATGGTTTCAGTCCTTTTGATCAAGCCATTTTCTTCTCGGAAAATGGGGAATAA 804 0.4104 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRRVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEVQIIELHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIESKESTDEGTNNTDYPHTSISGGSLQNVEIKSLESVGTKEMTETEGEGEEKNVTWDDTTELLNNFEMLCSPLELGSWVSQETNTSTNSLCSSSVSLDDESSYILENSLEQWVDSMNSILSWDGFSPFDQAIFFSENGE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01703 267 SMART sant 66 114 IPR001005 -
Phco3g01703 267 SMART sant 13 63 IPR001005 -
Phco3g01703 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco3g01703 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco3g01703 267 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Phco3g01703 267 CDD SANT 16 61 IPR001005 -
Phco3g01703 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco3g01703 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 216 - -
Phco3g01703 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco3g01703 267 FunFam MYB transcription factor 68 129 - -
Phco3g01703 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco3g01703 267 Gene3D - 68 143 - -
Phco3g01703 267 CDD SANT 70 110 IPR001005 -
Phco3g01703 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco3g01703 267 MobiDBLite consensus disorder prediction 127 150 - -
Phco3g01703 267 FunFam MYB-related transcription factor 13 66 - -
Phco3g01703 267 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01703 Phco-Chr3 29468056 29469045 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g01703 Myb_DNA-binding 6.5e-12 CL0123