Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01648 ATGTTAATAAACAACGCAAACAAGCACCAAAAACACACTTCCTCCATCTTCAATTCTTCCCCCAAAATGAGCCAGTGTGTTCCCAGCTGGGACCTCGACGACAACCCACCATCCCCAAGACTCTCACTTCGCTCCAACTCCAACTCCAATTCCACTGCGCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCCCCCCACGAGCGCCGCCAATAAGTACACATGGGAGAAGCCACGCGCCAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCGCACTGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGGGAGCGCCGGGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTAGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCATGGGGCGAAGGGACGGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACCTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGTTTGGTGTCGCTTTCACTTCCTCCTCTATCAACTCCCTCGACAACACCAGCTCCGCTAAGCACTGCACCCACACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAAACGGGGACGAGGAGAAGAAACAGAGAGCAAAAGGAAAATCGTCGGTGTCTACTAAAAGGAGTAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGATGCCATTGACCATGCAACAGCAGCTTCAAATGTCTATGATGTCTCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGTTGGACATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCGATGGCAGCGTCGTGGGATGCCGCTGCGGCCGGAGGTGGTGACCGATTTCAAGGAAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACGCTTTTCGGATGCCAATCACAGCCCCTGACCATGGATGCCTACAGCAGACTTGTTGCGATGTATCAGCAGCTGCACCAACCTCCAGTTTCTGGTTCCAAGAACTGA 1431 0.5444 MLINNANKHQKHTSSIFNSSPKMSQCVPSWDLDDNPPSPRLSLRSNSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAANKYTWEKPRASGTLESIVNQATSLPHCGKPTLNGDGGVYGNFLVPWLDPHGSAGTANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGREMSGRDQSVSGSATFGRDSKHVTLDTCDREFGVAFTSSSINSLDNTSSAKHCTHTTTVDDHDSVSHSKPVGENGDEEKKQRAKGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMMPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGLDMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPLTMDAYSRLVAMYQQLHQPPVSGSKN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01648 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Phco3g01648 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 352 IPR036638 GO:0046983
Phco3g01648 476 CDD bHLH_AtPIF_like 290 351 IPR047265 -
Phco3g01648 476 SMART finulus 296 345 IPR011598 GO:0046983
Phco3g01648 476 Gene3D - 285 351 IPR036638 GO:0046983
Phco3g01648 476 MobiDBLite consensus disorder prediction 240 305 - -
Phco3g01648 476 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 63 470 IPR031066 -
Phco3g01648 476 MobiDBLite consensus disorder prediction 1 26 - -
Phco3g01648 476 Coils Coil 296 316 - -
Phco3g01648 476 MobiDBLite consensus disorder prediction 39 55 - -
Phco3g01648 476 MobiDBLite consensus disorder prediction 250 280 - -
Phco3g01648 476 MobiDBLite consensus disorder prediction 1 55 - -
Phco3g01648 476 MobiDBLite consensus disorder prediction 192 214 - -
Phco3g01648 476 FunFam transcription factor UNE10 isoform X1 285 350 - -
Phco3g01648 476 Pfam Helix-loop-helix DNA-binding domain 295 340 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01648 Phco-Chr3 21798526 21803283 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01648 HLH 7.3e-14 No_clan