Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01641 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAAGAGCTTCTCCAATGGGAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAAGCCGATTCTGCTTCTTCTTCATCTTCATCGTCATCCGATGATGACGAGGACGGTGACAAGGGTCTCTGTTACGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTGGTGGATCCCGAATTCTCGTTCGCAGCTGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAAAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAATAATAATAATAACAACAACCACAATTATTATTATTATAATGATAATAATAATAATGATACTAACAACTATACCACCCCCAGCATGAAGAAGCAGGTTTTCGGAACCGAACATGAAGCCCTGACGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGACCACGAACCTGCGAGCTCGGTTTCCGAAGCAACGACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCGAGGGACAAATGGAAGCGAAATAAGGCGCAGCCGCAATTCGTGGAGGTGGAAGATCAATATGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGACGAAGCGTTTGAGGAGAGCGAGGAATCTCAAGAGACAATGAAACTGTGCAAAAACCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCGTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAATGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAGAGTGTAACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTATGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCGCAACAGTTCCATCAACTTCAGCAAAGTGTGGAAACAGCTTCATAGATCTCAACCTTCCGGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTGTCGGATGCAGAATTCGTCAAAACCCGATAG 1158 0.4965 MDKHKCKLCFKSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEADSASSSSSSSSDDDEDGDKGLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNNHNYYYYNDNNNNDTNNYTTPSMKKQVFGTEHEALTKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRNKAQPQFVEVEDQYEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKMDGEEAEVEHRKKSVTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPATVPSTSAKCGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01641 385 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 120 135 - -
Phco3g01641 385 SUPERFAMILY beta-beta-alpha zinc fingers 257 334 IPR036236 -
Phco3g01641 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 339 IPR013087 -
Phco3g01641 385 Gene3D Classic Zinc Finger 255 334 - -
Phco3g01641 385 SMART c2h2final6 4 26 IPR013087 -
Phco3g01641 385 SMART c2h2final6 312 334 IPR013087 -
Phco3g01641 385 SMART c2h2final6 258 280 IPR013087 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 44 59 - -
Phco3g01641 385 MobiDBLite consensus disorder prediction 32 74 - -
Phco3g01641 385 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 384 IPR044303 GO:0006355
Phco3g01641 385 Pfam C2H2-type zinc finger 312 334 - -
Phco3g01641 385 Pfam C2H2-type zinc finger 257 282 - -
Phco3g01641 385 Pfam C2H2-type zinc finger 4 27 - -
Phco3g01641 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 370 385 - -
Phco3g01641 385 MobiDBLite consensus disorder prediction 100 135 - -
Phco3g01641 385 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 217 246 - -
Phco3g01641 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 100 116 - -
Phco3g01641 385 MobiDBLite consensus disorder prediction 218 241 - -
Phco3g01641 385 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Phco3g01641 385 MobiDBLite consensus disorder prediction 366 385 - -
Phco3g01641 385 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Phco3g01641 385 Coils Coil 215 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01641 Phco-Chr3 21094003 21095160 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco3g01641 zf-C2H2_6 3e-13 CL0361