Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01552 ATGTACATCATCCTCCTCAAACTGCTACTATTCCTCACATGGGCTTCTTCTCCATCTCTTTCCACCTCCATCACCCAGCTTGATACTCTCTTGGCCATCAGAGACTCTCTAGACCCAGAGAACCGCGTGTTGCTCTCATGGACCCCCCATTCGGACCCCTGCAGTGGTGCCTCTTTTGACGGTGTGGCTTGCAATGAGCAAGGCCTTGTTACCAATATTTCACTGCAAGGAAAGGGTCTATACGGAACAGTACCTGATGCTTTGGCTGCTCTGAAGAGCTTGACGGGTCTCTTCCTTCACTTCAATGCCCTCAATGGGATATTTCCCAAGCAAATCACCACTTTGACTCACCTAACTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGATATCCCTCGAGAGATTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTTGCTATAACAAGTTTAGAGGGAATATACCAAGTGAACTGGGAAGGTTGAAGAAGCTCAGTGTTGTTGCACTGCAATATAATCAACTAAATAGCGCCATTCCTGCGAGTTTGGGTGAAGTGGGGACATTGGCGCGATTGGATCTGAGCTTTAATAGCCTCTTGGGTCCAATTCCGGTGACATTGGCTAATGCAGCTAAACTCCAGAGTCTCAATGTTCGTAACAATTCTCTCTCCGGCCGTGTACCTTTAGCTCTGAGAAGACTCAAAGGTAGGTTTGAGTACATGAACAATCCTGGTTTATGTGGGACTGGATTTGCTGATTTAGATTCTTGTAAAGAAGTAAGCACTTCAGAACCGGTGAGACCCGAACCATATGAACCTGGTCATACTTCTACCAAAGATCTTCCTGCATCAATGGAACCACAACATGAAAGCTGTGGTCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTGTGGTTTTTACCATCATTGCAGTGGTTTTTGCTTCAACAGGTGCTGGACTGCTTTTGCTCTTTTGGCGACGCAGTCAGAATCAGAAAATTGGAAGTTCTGATAACGGGCTTAAACAAGTGTGTCAGAAAAGTGCGTTTCCTCTTATCAGTTTGGAGTATTCTGACGTTTGGGACCCATTAGAGAAAGGTGGAACTGGGTATTCCTGGGAAATTCTGGAAGGATTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTGAAATGTTCTCAGAGGTAAATTTATTGGGGAAGAGTGAGTATTCGGCTGTGTACCGGGGGGTTTTGAGAGATGGTTCTGTTGTAACTATAAAATGCATTGCCATGACAAGTTGCAAATCTGATGAAGGTGAGTTCTTGAAAGGTTTGAAGATTTTGACCTCGTTAAGGCATGAAAATGTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGGCGCGGGGAATGTTTTCTGATCTATGACTCTTTCTCTAACGGGAGTTTGTTACAGTATCTTGATGCTAAGAGAAACAGTGGTAGGGTACTTGATTGGTCGACCAGAGTGTTGATCATTCGTGGTATCGCCAAAGGTATGGATTATCTGCATAGGAAGAAAGGAAGGCAACATGGTAGAGTTCAGGAAAATATATCAGCTGAAAATATAGTTCTGGATTGTGGGTATAAGGCTTTAATTGGAGATTCAGGATTGCACAATCTCCTTGAAGATGATGTTGTTTTTTCCGCCCTGAAAGCTAGCGCTGGCATGGGATATCTGGCTCCAGAGTACAGGAGAAGTGGTGGTTTGAGTGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTTTTCCAGGTTCTGAGTGGAAAACGTGATACGAGGCAGTTAAATTTGGAAAGTGGTAGTTTGAAAGATATAGTTGATGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCAGCCAAGCTGAGAAGAGTTGCTTTGCTTTGCACCCACGACTCCCCACATCTTCGACCATCTATGGGCACCCTAATGCTACAACTGGATGCTCAACACTAG 1986 0.4381 MYIILLKLLLFLTWASSPSLSTSITQLDTLLAIRDSLDPENRVLLSWTPHSDPCSGASFDGVACNEQGLVTNISLQGKGLYGTVPDALAALKSLTGLFLHFNALNGIFPKQITTLTHLTDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFRGNIPSELGRLKKLSVVALQYNQLNSAIPASLGEVGTLARLDLSFNSLLGPIPVTLANAAKLQSLNVRNNSLSGRVPLALRRLKGRFEYMNNPGLCGTGFADLDSCKEVSTSEPVRPEPYEPGHTSTKDLPASMEPQHESCGHCKRTSKSSKIGVVFTIIAVVFASTGAGLLLLFWRRSQNQKIGSSDNGLKQVCQKSAFPLISLEYSDVWDPLEKGGTGYSWEILEGFMFNLEEVERATEMFSEVNLLGKSEYSAVYRGVLRDGSVVTIKCIAMTSCKSDEGEFLKGLKILTSLRHENVVRLRGFCCSKGRGECFLIYDSFSNGSLLQYLDAKRNSGRVLDWSTRVLIIRGIAKGMDYLHRKKGRQHGRVQENISAENIVLDCGYKALIGDSGLHNLLEDDVVFSALKASAGMGYLAPEYRRSGGLSEKSDVYAFGVIVFQVLSGKRDTRQLNLESGSLKDIVDENLEGMFSESEAAKLRRVALLCTHDSPHLRPSMGTLMLQLDAQH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01552 661 MobiDBLite consensus disorder prediction 263 295 - -
Phco3g01552 661 SUPERFAMILY L domain-like 23 236 - -
Phco3g01552 661 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Phco3g01552 661 Pfam Protein tyrosine and serine/threonine kinase 399 656 IPR001245 GO:0004672|GO:0006468
Phco3g01552 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 150 657 IPR046959 -
Phco3g01552 661 Gene3D Phosphorylase Kinase; domain 1 374 472 - -
Phco3g01552 661 SUPERFAMILY Protein kinase-like (PK-like) 376 657 IPR011009 -
Phco3g01552 661 FunFam Protein NSP-INTERACTING KINASE 2 23 173 - -
Phco3g01552 661 FunFam Protein NSP-INTERACTING KINASE 2 367 473 - -
Phco3g01552 661 Gene3D Ribonuclease Inhibitor 142 250 IPR032675 -
Phco3g01552 661 Gene3D Ribonuclease Inhibitor 25 139 IPR032675 -
Phco3g01552 661 ProSiteProfiles Protein kinase domain profile. 395 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01552 661 Gene3D Transferase(Phosphotransferase) domain 1 474 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01552 Phco-Chr3 19747439 19749776 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Phco3g01552 PK_Tyr_Ser-Thr 3e-34 CL0016