Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01549 ATGAAAAGCAGACTCACACAAAGCTTGTGGAAGCCACAGCCATGGAAGAAGGTTTCTTGCTATGCAATTTCATTGCCATTTTTCTGCTTTGATCAGGTCATAAAGGATTTCTTAATGGGGTCACCTGTTAATGGATTGGATTCTTTATCAGAGGTTCAGAATTCGGTTTCTGTGGTAGATCATGATTCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCACCGTTAAGCACATCTAGAAATTATGGGGCTTCATCCAGTCAGCATAACTATGGAATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAACGTAGTGCGCGATGAAATGCCTAATATGGAGAAGCAGCACTATGACACAAATGGAAAATCTGAGTATGTTAGCCTCAATAAAGCTGTTGAAAGTTGTTTGGGAAAGAATATCTCCAAAATGGAAACAAAATTAAGTATCAAGCAACCATTAGATGGTTCCAAGAATTGTGATTCTAGTGGCGACAATTGTAAATTAGTTTCAACAAAAGGTGTTGTTGATCGAACAAAGAGCAAGTGTGAGTCAGAGATTGGCTTTTGTCCAAGTCCTCAGAGTAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGCCAACAATGGAGTGAGTGAATGTGTTAGTGTTGATAAGTCAGTGGAAAGTGGGGAAGTTACTAATTCCTGTGAACTTAACGAGAGCCGGAAGACCAGCATCTGTAGAGGCAGCACTGGAAGTGATGTTAGTGATGAGAGCAGCACTAGTAGTCTAAGCAGTGCTTTGTATAAGCCCCACAAGGCAAATGATATAAGATGGGAAGCAATTCAAGCCATCCGAGTTCGTGACGGGGTGTTGGAAATGCGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGATATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACCAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACAGAGTTAGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTGCCCACATTGTATACGCACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTATGTGGCAGAAGTTCTCCTTGCCTTAGAGTACTTGCACATGCTTGGGGTCATCTACAGAGATCTGAAGCCTGAGAATGTGTTGGTGAGAGAAGATGGGCATATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACTCTTGTGAAGTCATCAAACTCTACCTTGGAGACAAAAAGCTCAGGATACTGCGTTCAGCCTTCCTGCATTGAGCCAACCTGTGTAATACAGCCAGACTGCATTCAGCCATCATGCTTCACACCGCGATTTCTCTCCGGCAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAACCAGGTGACCCCTCTTCCCGAGCTTATTGCCGAGCCCACGAATGCTCGATCAATGTCCTTTGTGGGGACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGTCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAACTCTTGTTCGGTAGAACGCCGTTCAAGGGTTCGGCAAACCGTGCAACACTATTCAATGTTGTTGGCCAGCCCTTGAAATTTCCAGAATCTCCCACTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGGCTTGCTTATAGACGTGGAGCAACAGAAATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCTCCAGAGATTCCAAGACAGGCCATGAAAGCACTTGCAGCTGAAAAGCTGCCTGGAGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 2031 0.4372 MKSRLTQSLWKPQPWKKVSCYAISLPFFCFDQVIKDFLMGSPVNGLDSLSEVQNSVSVVDHDSPSTSGIPRPSRPPLSTSRNYGASSSQHNYGMKTIHHQKHSYQEADNVVRDEMPNMEKQHYDTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQPLDGSKNCDSSGDNCKLVSTKGVVDRTKSKCESEIGFCPSPQSSFYSEAKESFANNGVSECVSVDKSVESGEVTNSCELNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRVRDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCVQPSCIEPTCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLKFPESPTVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEIPRQAMKALAAEKLPGVKPSGNYLDIDFF 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01549 676 Gene3D Phosphorylase Kinase; domain 1 293 378 - -
Phco3g01549 676 FunFam serine/threonine-protein kinase D6PK-like 527 650 - -
Phco3g01549 676 Pfam Protein kinase domain 529 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01549 676 Pfam Protein kinase domain 296 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01549 676 Gene3D Transferase(Phosphotransferase) domain 1 379 447 - -
Phco3g01549 676 SMART serkin_6 295 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01549 676 CDD STKc_phototropin_like 293 652 - -
Phco3g01549 676 PANTHER FLIPPASE KINASE 1-RELATED 122 654 - -
Phco3g01549 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Phco3g01549 676 Gene3D Transferase(Phosphotransferase) domain 1 526 650 - -
Phco3g01549 676 FunFam Serine/threonine-protein kinase D6PK-like 293 378 - -
Phco3g01549 676 MobiDBLite consensus disorder prediction 58 90 - -
Phco3g01549 676 ProSiteProfiles Protein kinase domain profile. 295 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01549 676 SUPERFAMILY Protein kinase-like (PK-like) 271 651 IPR011009 -
Phco3g01549 676 FunFam serine/threonine-protein kinase D6PK-like 379 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01549 Phco-Chr3 19589893 19593932 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco3g01549 Pkinase 6.6e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01549 3 19589893 19593932 Phco3g01549 3 19589893 19593932 ECH