Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01533 ATGAAAAGAGTTTCTACATGGATATCATTTGCCACTTTCCTTTTCCTCCTAAACATCACCAGTTGTGTAGAGTATGAGGTCAAGAGAACACTGATACAATTTCTGGCACAAGTCTCTGGTAATGATGCACAACAGAACTCCACTTTGGTATGGAAACAAGACTCTGATCCCTGCAAGGGACCCTGGCAAGGTGTACACTGTGATTCTCAAAACATCTCCATAAAGAAGTTGCTACTTGATAAGCTCAATTTCTCTGGAACACTTGATCTTGCTATGCTTTGCAACTTCCAGCCCCTGGCTGCATCTCTCACATACCTTAGCCTTGATGGCAACAAAATTAGTGGGGAAATAGCATCTGAGGTTGGAAATTGCAAACACCTCACACGCCTGCACCTTAGTGGAAACCAACTTGCTGGAGACCTTCCTAGTTCACTTTCTATGCTCAACAATTTGAAGAGACTGGACATTTCAAATAACCATTTTTCTGGATCTTTACCAAACTTGTCTAGAATATCAGGGCTGAACATGTTCCTTGCACAGAACAATTACCTTGGAGGAACTATACCTGCTTTTGAGTTCTCTAATTTTGACCAATTCAATGTCTCCTTTAACAATTTCCGTGGCCACATTCCAAACGTGCATGGCTATTTCTCCGCTGACAGCTTTCTTGGTAATCCTGAACTATGTGGAAATCCACTACCAAAGAATTGCTCTGATCAGCCTATGCCTTTTAGTGAGGCTCAGACATCGGAAAAATCAATGGGTCCTTCTAAGGACCAGATTCTTATGTACTCAGGTTATGCTGCATTGGTTGTCATCATTGTCCTTTTCCTAGTCTTAAAGCTGTGTAGAAGAAAGAAGGGAGAGAATAAAATTGAAGCATTGAATAATGGGGTAGGTGCCACTGGTGGTGGTGTTCAAAAGCCGATCAATGTTTCAAGTGAATACAAAACTGAGGTAAGCAGATCTGAGTTTTCAGTCCCTTCTGAAAGTGGGATGGTTGCACAATCACTTGTAGTTCTTTCAAGCCAAGTGGAAATTGAATTGAGATTGGAGGACTTGTTGGGGGCACCTGCAGAACTGATTGGAAGAGGAAAAAATGGAAGTCTTTACAAGGTGATGCTTCACAATGGGATAATGGTAGTTGTGAAAAGGATCAAGGATTGGACTATTTCAAGCCACGATTTCATACAAAGAATGCGAATACTTAGCCAAGCAAAGCACCCTCATGTCCTGGCACCACTTGCTTTCTATTGTTCTAAACAAGAGAAGCTTTTGGTGTATGAATATCAGCAGAATGGCAGTTTATTCAAGCTTCTACATGGTACTACAAAAGCCTTAGACTGGAGCAGCAGACTTGGGATTGCAGCTACAATTGCTGAGGCATTAGCTTTCCTGCACCAAGAGCTAGGCCATCATGGTATAGTTCATGGTAATCTGAAATCCTCCAACATTTTGCTAAACAAGAATATGGAGGCATGCATAAGTGAATGTGGTATTATGGATATGGATGATGAAAGAGGTTCACCTTTAGGCAGTTCTAGTGATGGTGGTGCATTAGATATGTTAAAGGGAGATGTTTATGGCTTTGGTGTGATTCTTCTTGAAGTGCTTACTGGTAAGTTAGTGAAGGGAAATGGGATTGACTTGACTGATTGGGTTCAGTCAGTTCTGAGGGAAGAATGGACAGGTGAAGTCTTTGACAAGTCCCTAATATCAGAGTATGCAAGCGAAGAGAGGATGGTGAATTTGCTTCAGGTGGCTATAAGATGTGTGAATCGTTCACCACAGGCTAGGCCAACCATGAACCAAGTTGCACTCATGATTAACACTATCAAAGAGGACGAAGAAAAATCCTTGATCTATGAAGTCTGA 1875 0.4165 MKRVSTWISFATFLFLLNITSCVEYEVKRTLIQFLAQVSGNDAQQNSTLVWKQDSDPCKGPWQGVHCDSQNISIKKLLLDKLNFSGTLDLAMLCNFQPLAASLTYLSLDGNKISGEIASEVGNCKHLTRLHLSGNQLAGDLPSSLSMLNNLKRLDISNNHFSGSLPNLSRISGLNMFLAQNNYLGGTIPAFEFSNFDQFNVSFNNFRGHIPNVHGYFSADSFLGNPELCGNPLPKNCSDQPMPFSEAQTSEKSMGPSKDQILMYSGYAALVVIIVLFLVLKLCRRKKGENKIEALNNGVGATGGGVQKPINVSSEYKTEVSRSEFSVPSESGMVAQSLVVLSSQVEIELRLEDLLGAPAELIGRGKNGSLYKVMLHNGIMVVVKRIKDWTISSHDFIQRMRILSQAKHPHVLAPLAFYCSKQEKLLVYEYQQNGSLFKLLHGTTKALDWSSRLGIAATIAEALAFLHQELGHHGIVHGNLKSSNILLNKNMEACISECGIMDMDDERGSPLGSSSDGGALDMLKGDVYGFGVILLEVLTGKLVKGNGIDLTDWVQSVLREEWTGEVFDKSLISEYASEERMVNLLQVAIRCVNRSPQARPTMNQVALMINTIKEDEEKSLIYEV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01533 624 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Phco3g01533 624 Gene3D Phosphorylase Kinase; domain 1 334 430 - -
Phco3g01533 624 SUPERFAMILY Protein kinase-like (PK-like) 359 608 IPR011009 -
Phco3g01533 624 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Phco3g01533 624 SUPERFAMILY L domain-like 48 216 - -
Phco3g01533 624 FunFam Leucine-rich repeat receptor protein kinase EMS1 95 191 - -
Phco3g01533 624 Pfam Protein tyrosine and serine/threonine kinase 360 502 IPR001245 GO:0004672|GO:0006468
Phco3g01533 624 ProSiteProfiles Protein kinase domain profile. 356 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01533 624 PANTHER OS05G0588300 PROTEIN 10 614 - -
Phco3g01533 624 Gene3D Transferase(Phosphotransferase) domain 1 432 623 - -
Phco3g01533 624 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Phco3g01533 624 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Phco3g01533 624 Gene3D Ribonuclease Inhibitor 196 240 IPR032675 -
Phco3g01533 624 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01533 Phco-Chr3 18974332 18976391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g01533 PK_Tyr_Ser-Thr 5.5e-21 CL0016